Sjoerd M.H. Huisman, Baldur Van Lew, Ahmed Mahfouz, Nicola Pezzotti, Thomas Höllt, Lieke Michielsen, Anna Vilanova, Marcel J.T. Reinders, Boudewijn P.F. Lelieveldt (2017), BrainScope: Interactive visual exploration of the spatial and temporal human brain transcriptome, In Nucleic Acids Research Volume 45.

Arlin Keo, N. Ahmad Aziz, Oleh Dzyubachyk, Jeroen Van Der Grond, Willeke M.C. van Roon-Mom, Boudewijn P.F. Lelieveldt, Marcel J.T. Reinders, Ahmed Mahfouz (2017), Co-expression Patterns between ATN1 and ATXN2 Coincide with Brain Regions Affected in Huntington’s Disease, In Frontiers in Molecular Neuroscience Volume 10 p.1-13.

Dana S. Poole, Nathalie Doorenweerd, Jaap J. Plomp, Ahmed Mahfouz, Marcel Reinders, Louise van der Weerd (2017), Continuous infusion of manganese improves contrast and reduces side effects in manganese-enhanced magnetic resonance imaging studies, In NeuroImage Volume 147 p.1-9.

Else Eising, Reinald Shyti, Peter A.C. 't Hoen, Lisanne S. Vijfhuizen, Sjoerd M.H. Huisman, Ludo A. M. Broos, Ahmed Mahfouz, Marcel J.T. Reinders, Michel D. Ferrari, Else A. Tolner, Boukje de Vries, Arn M.J.M. van den Maagdenberg (2017), Cortical Spreading Depression Causes Unique Dysregulation of Inflammatory Pathways in a Transgenic Mouse Model of Migraine, In Molecular Neurobiology Volume 54 p.2986-2996.

Nathalie Doorenweerd, Ahmed Mahfouz, Maaike van Putten, Rajaram Kaliyaperumal, Peter A.C. 't Hoen, Jos G.M. Hendriksen, Annemieke M. Aartsma-Rus, Jan J.G.M. Verschuuren, Erik H. Niks, Marcel J.T. Reinders, Hermien E. Kan, Boudewijn P.F. Lelieveldt (2017), Timing and localization of human dystrophin isoform expression provide insights into the cognitive phenotype of Duchenne muscular dystrophy, In Scientific Reports Volume 7 p.1-12.

Ahmed Mahfouz (2016), Computational analysis of brain transcriptome atlases: Understanding molecular mechanisms, PhD Thesis Delft University of Technology.

E Eising, SMH Huisman, AMETA Mahfouz, LS Vijfhuizen, V Anttila, BS Winsvold, TKM Arfan Ikram, T Freilinger, J Kaprio, DI Boomsma, CM van Duijn, MRR Jarvelin, JA Zwart, L Quaye, DP Strachan, C Kubisch, M Dichgans, GD Smith, K Stefansson, A Palotie, DI Chasman, MD Ferrari, GM Terwindt, B de Vries, DR Nyholt, BPF Lelieveldt, AMJM van den Maagdenberg, MJT Reinders (2016), Gene co-expression analysis identifies brain regions and cell types involved in migraine pathophysiology: A GWAS-based study using the Allen Human Brain Atlas, In Human Genetics Volume 135 p.425-439.

Ahmed Mahfouz, Boudewijn Lelieveldt, Aldo Grefhorst, Lisa T.C.M. van Weert, Isabel M. Mol, Hetty C.M. Sips, José K. van den Heuvel, Nicole A. Datson, Jenny A. Visser, Marcel Reinders, Onno C. Meijer (2016), Genome-wide coexpression of steroid receptors in the mouse brain: Identifying signaling pathways and functionally coordinated regions , In Proceedings of the National Academy of Sciences of the United States of America Volume 113 p.2738-2743.

Sjoerd Huisman, E Eising, Ahmed Mahfouz, Lisanne Vijfhuizen, Boudewijn Lelieveldt, AMJM van den Maagdenberg, Marcel Reinders (2016), Interpreting a migraine GWAS using gene expression in healthy human brain.

Ahmed Mahfouz, Nathalie Doorenweerd, Maaike van Putten, Rajaram Kaliyaperumal, PAC 't Hoen, J.J.G.M. (Jan) Verschuuren, EH (Erik) Niks, Marcel Reinders, HE (Hermien) Kan, Boudewijn Lelieveldt (2016), Longitudinal dystrophin gene expression from the fetal to adult human brain correlates with genes linked to autism spectrum disorders and intellectual disability.