Lieke Michielsen, Marcel J.T. Reinders, Ahmed Mahfouz (2021), Hierarchical progressive learning of cell identities in single-cell data, In Nature Communications Volume 12.

Rodrigo Coutinho de Almeida, Ahmed Mahfouz, Hailiang Mei, Evelyn Houtman, Wouter den Hollander, Jamie Soul, Eka Suchiman, Rob G.H.H. Nelissen, Marcel Reinders, More Authors (2021), Identification and characterization of two consistent osteoarthritis subtypes by transcriptome and clinical data integration, In Rheumatology (Oxford, England) Volume 60 p.1166-1175.

Mandy Meijer, Arlin Keo, Judith M.C. van Leeuwen, Oleh Dzyubachyk, Onno C. Meijer, Christiaan H. Vinkers, Ahmed Mahfouz (2021), Molecular characterization of the stress network in individuals at risk for schizophrenia, In Neurobiology of Stress Volume 14.

S.E.E.C. Bauduin, I.L.B. den Rooijen, M. Meijer, S.J.A. van der Werff, A. Keo, O. Dzyubachyk, A.M. Pereira, E.J. Giltay, N.J.A. van der Wee, O.C. Meijer, A. Mahfouz (2021), Potential associations between immune signaling genes, deactivated microglia, and oligodendrocytes and cortical gray matter loss in patients with long-term remitted Cushing's disease, In Psychoneuroendocrinology Volume 132 p.1-8.

Nathalie Groen, Floris Leenders, Ahmed Mahfouz, Amadeo Munoz-Garcia, Mauro J. Muraro, Natascha de Graaf, Ton J. Rabelink, Rob Hoeben, Marcel J.T. Reinders, More Authors (2021), Single-cell transcriptomics links loss of human pancreatic β-cell identity to er stress, In Cells Volume 10.

Dana L.E. Vergoossen, Arlin Keo, Ahmed Mahfouz, Maartje G. Huijbers (2021), Timing and localization of myasthenia gravis-related gene expression, In European journal of neuroscience Volume 54 p.5574-5585.

D.L. Keo, Oleh Dzyubachyk, Jeroen Van Der Grond, Jacobus J. van Hilten, M.J.T. Reinders, A.M.E.T.A. Mahfouz (2021), Transcriptomic Signatures Associated With Regional Cortical Thickness Changes in Parkinson’s Disease, In Frontiers in Neuroscience Volume 15.

Alex N. Salazar, Franklin L. Nobrega, Christine Anyansi, Cristian Aparicio-Maldonado, Ana Rita Costa, Anna C. Haagsma, Anwar Hiralal, Ahmed Mahfouz, Rebecca E. McKenzie, Teunke van Rossum, Stan J.J. Brouns, Thomas Abeel (2020), An educational guide for nanopore sequencing in the classroom, In PLoS Computational Biology Volume 16 p.e1007314.

Tamim Abdelaal, Paul de Raadt, Boudewijn P.F. Lelieveldt, Marcel J.T. Reinders, Ahmed Mahfouz (2020), SCHNEL: Scalable clustering of high dimensional single-cell data, In Bioinformatics (Oxford, England) Volume 36 p.i849-i856.

Tamim Abdelaal, Soufiane Mourragui, Ahmed Mahfouz, Marcel J.T. Reinders (2020), SpaGE: Spatial Gene Enhancement using scRNA-seq, In Nucleic Acids Research Volume 48.