Natasja L. De Vries, Vincent Van Unen, Marieke E. Ijsselsteijn, Tamim Abdelaal, Ruud Van Der Breggen, Arantza Farina Sarasqueta, Ahmed Mahfouz, Koen C.M.J. Peeters, Thomas Höllt, Boudewijn P.F. Lelieveldt, Frits Koning, Noel F.C.C. De Miranda (2019), High-dimensional cytometric analysis of colorectal cancer reveals novel mediators of antitumour immunity, In Gut Volume 69 (2020) p.691-703.

Tamim Abdelaal, Vincent van Unen, Thomas Höllt, Frits Koning, Marcel J.T. Reinders, Ahmed Mahfouz (2019), Predicting Cell Populations in Single Cell Mass Cytometry Data, In Cytometry Part A Volume 95 p.769-781.

Anita van den Heuvel, Ahmed Mahfouz, Susan L. Kloet, Judit Balog, Baziel G.M. van Engelen, Rabi Tawil, Stephen J. Tapscott, Silvère M. van der Maarel (2019), Single-cell RNA sequencing in facioscapulohumeral muscular dystrophy disease etiology and development, In Human Molecular Genetics Volume 28 p.1064-1075.

Sjoerd M.H. Huisman, Ahmed Mahfouz, Nematollah K. Batmanghelich, Boudewijn P.F. Lelieveldt, Marcel J.T. Reinders (2018), A structural equation model for imaging genetics using spatial transcriptomics, In Brain Informatics Volume 5.

Erdogan Taskesen, Sjoerd M.H. Huisman, Ahmed Mahfouz, Jesse H. Krijthe, Jeroen de Ridder, Anja van de Stolpe, Erik van den Akker, Wim Verhaegh, Marcel J.T. Reinders (2018), Erratum to: Pan-cancer subtyping in a 2D-map shows substructures that are driven by specific combinations of molecular characteristics (Scientific Reports, (2016), 6, 1, (24949), 10.1038/srep24949).

Lisa L. Koorneef, Marit Bogaards, Marcel J.T. Reinders, Onno C. Meijer, Ahmed Mahfouz (2018), How metabolic state may regulate fear: Presence of metabolic receptors in the fear circuitry, In Frontiers in Neuroscience Volume 12.

Simin Mahinrad, Marjolein Bulk, Isabelle Van Der Velpen, Ahmed Mahfouz, Willeke Van Roon-Mom, Neal Fedarko, Sevil Yasar, Behnam Sabayan, Diana Van Heemst, Louise Van Der Weerd (2018), Natriuretic peptides in post-mortem brain tissue and cerebrospinal fluid of non-demented humans and Alzheimer's disease patients, In Frontiers in Neuroscience Volume 12 p.1-12.

Rodrigo Coutinho de Almeida, Yolande F.M. Ramos, Ahmed Mahfouz, Wouter den Hollander, Nico Lakenberg, Evelyn Houtman, Marcella van Hoolwerff, H. Eka D. Suchiman, Alejandro Rodriguez-Ruiz, P. Eline Slagboom, Hailiang Mei, Szymon M. Kielbasa, Rob Nelissen, Marcel Reinders, Ingrid Meulenbelt (2018), RNA sequencing data integration reveals an miRNA interactome of osteoarthritis cartilage, In Annals of the Rheumatic Diseases: an international peer-reviewed journal for health professionals and researchers in the rheumatic diseases p.1-8.

Ishaan Gupta, Paul G. Collier, Bettina Haase, Ahmed Mahfouz, Anoushka Joglekar, Taylor Floyd, Frank Koopmans, Ben Barres, Wenjie Luo, More Authors (2018), Single-cell isoform RNA sequencing characterizes isoforms in thousands of cerebellar cells, In Nature Biotechnology p.1197-1202.

Ahmed Mahfouz, Sjoerd M.H. Huisman, Boudewijn P.F. Lelieveldt, Marcel J.T. Reinders (2017), Brain transcriptome atlases: A computational perspective, In Brain Structure and Function p.1557-1580.