Tamim Abdelaal, Lieke C.M. Michielsen, Davy Cats, Dylan Hoogduin, Hailiang Mei, Marcel J.T. Reinders, Ahmed Mahfouz (2019), A comparison of automatic cell identification methods for single-cell RNA sequencing data, In Genome biology Volume 20 p.1-19.

Rebecca D. Hodge, Trygve E. Bakken, Jeremy A. Miller, Kimberly A. Smith, Eliza R. Barkan, Lucas T. Graybuck, Jennie L. Close, Thomas Hollt, Ahmed Mahfouz, Boudewijn Lelieveldt, More Authors (2019), Conserved cell types with divergent features in human versus mouse cortex, In Nature Volume 573 p.61-68.

Eva M.G. Viho, Jacobus C. Buurstede, Ahmed Mahfouz, Lisa L. Koorneef, Lisa T.C.M. Van Weert, René Houtman, Hazel J. Hunt, Jan Kroon, Onno C. Meijer (2019), Corticosteroid Action in the Brain: The Potential of Selective Receptor Modulation, In Neuroendocrinology Volume 109 p.266-276.

Tamim Abdelaal, Thomas Hollt, Vincent van Unen, Boudewijn P.F. Lelieveldt, Frits Koning, Marcel Reinders, Ahmed Mahfouz (2019), CyTOFmerge: integrating mass cytometry data across multiple panels, In Bioinformatics Volume 35 p.4063-4071.

Na Li, Vincent van Unen, Nannan Guo, Tamim Abdelaal, Antonios Somarakis, Jeroen Eggermont, A.M.E.T.A. Mahfouz, Susana M. Chuva de Sousa Lopes, Boudewijn P.F. Lelieveldt, Frits Koning (2019), Early-life compartmentalization of immune cells in human fetal tissues revealed by high-dimensional mass cytometry, In Frontiers in Immunology Volume 10 p.1-13.

Catherine A. Ziats, Luke P. Grosvenor, Sara M. Sarasua, Audrey E. Thurm, Susan E. Swedo, Ahmed Mahfouz, Owen M. Rennert, Mark N. Ziats (2019), Functional genomics analysis of Phelan-McDermid syndrome 22q13 region during human neurodevelopment, In PLoS ONE Volume 14 p.1-13.

Natasja L. De Vries, Vincent Van Unen, Marieke E. Ijsselsteijn, Tamim Abdelaal, Ruud Van Der Breggen, Arantza Farina Sarasqueta, Ahmed Mahfouz, Koen C.M.J. Peeters, Thomas Höllt, Boudewijn P.F. Lelieveldt, Frits Koning, Noel F.C.C. De Miranda (2019), High-dimensional cytometric analysis of colorectal cancer reveals novel mediators of antitumour immunity, In Gut Volume 69 (2020) p.691-703.

Tamim Abdelaal, Vincent van Unen, Thomas Höllt, Frits Koning, Marcel J.T. Reinders, Ahmed Mahfouz (2019), Predicting Cell Populations in Single Cell Mass Cytometry Data, In Cytometry Part A Volume 95 p.769-781.

Anita van den Heuvel, Ahmed Mahfouz, Susan L. Kloet, Judit Balog, Baziel G.M. van Engelen, Rabi Tawil, Stephen J. Tapscott, Silvère M. van der Maarel (2019), Single-cell RNA sequencing in facioscapulohumeral muscular dystrophy disease etiology and development, In Human Molecular Genetics Volume 28 p.1064-1075.

Lisa L. Koorneef, Marit Bogaards, Marcel J.T. Reinders, Onno C. Meijer, Ahmed Mahfouz (2018), How metabolic state may regulate fear: Presence of metabolic receptors in the fear circuitry, In Frontiers in Neuroscience Volume 12.