Nina Roothans, Minke Gabriëls, T.E.P.M.F. Abeel, Martin Pabst, Mark C. M. van Loosdrecht, Michele Laureni (2024), Aerobic denitrification as N2O source in microbial communities.

Julia A. Schwartzman, Francois Lebreton, Rauf Salamzade, Terrance Shea, Melissa J. Martin, Katharina Schaufler, Aysun Urhan, Thomas Abeel, Ilana L.B.C. Camargo, More Authors (2024), Global diversity of enterococci and description of 18 previously unknown species, In Proceedings of the National Academy of Sciences of the United States of America Volume 121.

D. Calderon Franco, Mark C.M. van Loosdrecht, T.E.P.M.F. Abeel, D.G. Weissbrodt (2023), Catch me if you can: capturing microbial community transformation by extracellular DNA using Hi-C sequencing, In Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology Volume 116 p.667-685.

Susan C. Yi, Anne Heijbroek, Luis Cutz, Stephanie Pillay, Wiebren de Jong, Thomas Abeel, Julia Gebert (2023), Effects of fir-wood biochar on CH4 oxidation rates and methanotrophs in landfill cover soils packed at three different proctor compaction levels, In Science of the Total Environment Volume 907.

Bianca-Maria Cosma , Ramin Shirali Hossein Zade, Erin Noel Jordan, Paul van Lent, Chengyao Peng, Stephanie Pillay, Thomas Abeel (2023), Evaluating long-read de novo assembly tools for eukaryotic genomes: insights and considerations, In GigaScience Volume 12.

Laura Henao, Ramin Shirali Hossein Zade, Silvia Restrepo, Johana Husserl, Thomas Abeel (2023), Genomes of four Streptomyces strains reveal insights into putative new species and pathogenicity of scab-causing organisms, In BMC Genomics Volume 24.

Lore Depuydt, Luca Renders, Thomas Abeel, Jan Fostier (2023), Pan-genome de Bruijn graph using the bidirectional FM-index, In BMC Bioinformatics Volume 24.

Marco Teixeira, Stephanie Pillay, Aysun Urhan, Thomas Abeel (2023), SHIP: identifying antimicrobial resistance gene transfer between plasmids, In Bioinformatics (Oxford, England) Volume 39.

Paul van Lent, Joep Schmitz, Thomas Abeel (2023), Simulated Design-Build-Test-Learn Cycles for Consistent Comparison of Machine Learning Methods in Metabolic Engineering, In ACS Synthetic Biology Volume 12 p.2588-2599.

Chengyao Peng, Ali May, Thomas Abeel (2023), Unveiling microbial biomarkers of ruminant methane emission through machine learning, In Frontiers in Microbiology Volume 14.