Junhan Wen, Thomas Abeel, Mathijs de Weerdt (2023), “How sweet are your strawberries?”: Predicting sugariness using non-destructive and affordable hardware, In Frontiers in Plant Science Volume 14.

D. Calderon Franco, Mark C.M. van Loosdrecht, T.E.P.M.F. Abeel, D.G. Weissbrodt (2022), Catch me if you can: Capturing extracellular DNA transformation in mixed cultures via Hi-C sequencing, 18th International Symposium on Microbial Ecology, Lausanne 2022.

M.S. Veldhuis, Simone Ariëns, Rolf J.F. Ypma, T.E.P.M.F. Abeel, Corina C.G. Benschop (2022), Explainable artificial intelligence in forensics: Realistic explanations for number of contributor predictions of DNA profiles, In Forensic Science International Volume 56.

Ramin Shirali Hossein Zade, Aysun Urhan, Alvaro Assis de Souza, Akash Singh, Thomas Abeel (2022), HAT: haplotype assembly tool using short and error-prone long reads, In Bioinformatics (Oxford, England) Volume 38 p.5352-5359.

Paula Ruibal, Kees L.M.C. Franken, Krista E. van Meijgaarden, Marjolein van Wolfswinkel, Ian Derksen, Ferenc A. Scheeren, Peter A. van Veelen, Thomas Abeel, Simone A. Joosten, More Authors (2022), Identification of HLA-E Binding Mycobacterium tuberculosis-Derived Epitopes through Improved Prediction Models, In Journal of Immunology Volume 209 p.1555-1565.

D. Calderon Franco, R.G. Sarelse, S. Christou, M. Pronk, Mark C.M. van Loosdrecht, T.E.P.M.F. Abeel, D.G. Weissbrodt (2022), Metagenomic profiling and transfer dynamics of antibiotic resistance determinants in a full-scale granular sludge wastewater treatment plant, In Water Research Volume 219.

S. Pillay, D. Calderon Franco, A. Urhan, T.E.P.M.F. Abeel (2022), Metagenomic-based surveillance systems for antibiotic resistance in non-clinical settings, In Frontiers in Microbiology Volume 13.

Lucas R. van Dijk, Bruce J. Walker, Timothy J. Straub, Colin J. Worby, Alexandra Grote, Henry L. Schreiber, Christine Anyansi, Amy J. Pickering, Scott J. Hultgren, Abigail L. Manson, Thomas Abeel, Ashlee M. Earl (2022), StrainGE: a toolkit to track and characterize low-abundance strains in complex microbial communities, In Genome biology Volume 23.

A. Urhan, T.E.P.M.F. Abeel (2021), A comparative study of pan-genome methods for microbial organisms: Acinetobacter baumannii pan-genome reveals structural variation in antimicrobial resistance-carrying plasmids, In Microbial Genomics Volume 7.

Aysun Urhan, Thomas Abeel (2021), Emergence of novel SARS-CoV-2 variants in the Netherlands, In Scientific Reports Volume 11.