Alex N. Salazar, Franklin L. Nobrega, Christine Anyansi, Cristian Aparicio-Maldonado, Ana Rita Costa, Anna C. Haagsma, Anwar Hiralal, Ahmed Mahfouz, Rebecca E. McKenzie, Teunke van Rossum, Stan J.J. Brouns, Thomas Abeel (2020), An educational guide for nanopore sequencing in the classroom, In PLoS Computational Biology Volume 16 p.e1007314.

Christine Anyansi, Timothy J. Straub, Abigail L. Manson, Ashlee M. Earl, Thomas Abeel (2020), Computational Methods for Strain-Level Microbial Detection in Colony and Metagenome Sequencing Data, In Frontiers in Microbiology p.1-17.

Francine J. Boonekamp, Sofiia Dashko, Donna Duiker, Thies Gehrmann, Marcel van den Broek, Maxime den Ridder, Martin Pabst, Vincent Robert, Thomas Abeel, Eline D. Postma, Jean Marc Daran, Pascale Daran-Lapujade (2020), Design and Experimental Evaluation of a Minimal, Innocuous Watermarking Strategy to Distinguish Near-Identical DNA and RNA Sequences, In ACS Synthetic Biology Volume 9 p.1361-1375.

D. Calderon Franco, Mark C.M. van Loosdrecht, T.E.P.M.F. Abeel, D.G. Weissbrodt (2020), Free-floating extracellular DNA: systematic profiling of mobile genetic elements and antibiotic resistance from wastewater, In Water Research Volume 189.

Christine Anyansi, Arlin Keo, Bruce J. Walker, Timothy J. Straub, Abigail L. Manson, Ashlee M. Earl, Thomas Abeel (2020), QuantTB- A method to classify mixed Mycobacterium tuberculosis infections within whole genome sequencing data, In BMC Genomics Volume 21.

Gregory P. Donaldson, Wen Chi Chou, Abigail L. Manson, Peter Rogov, Thomas Abeel, James Bochicchio, Dawn Ciulla, Alexandre Melnikov, Peter B. Ernst, More Authors (2020), Spatially distinct physiology of Bacteroides fragilis within the proximal colon of gnotobiotic mice, In Nature Reviews Microbiology Volume 5 p.746-756.

Alex N. Salazar, Arthur R. Gorter De Vries, Marcel Van Den Broek, Nick Brouwers, Pilar de la Torre Cortes, Niels G.A. Kuijpers, Jean Marc G. Daran, Thomas Abeel (2019), Chromosome level assembly and comparative genome analysis confirm lager-brewing yeasts originated from a single hybridization, In BMC Genomics Volume 20 p.1-18.

Keira A. Cohen, Abigail L. Manson, Christopher A. Desjardins, Thomas Abeel, Ashlee M. Earl (2019), Deciphering drug resistance in Mycobacterium tuberculosis using whole-genome sequencing: Progress, promise, and challenges, In Genome Medicine p.1-18.

Keira A. Cohen, Abigail L. Manson, Thomas Abeel, Christopher A. Desjardins, Sinead B. Chapman, Sven Hoffner, Bruce W. Birren, Ashlee M. Earl (2019), Extensive global movement of multidrug-resistant M. tuberculosis strains revealed by whole-genome analysis, In Thorax Volume 74 p.882-889.

Arthur Gorter de Vries, Maaike Voskamp, Aafke van Aalst, L.H. Kristensen, Liset Jansen, Alex Salazar, Marcel van den Broek, Nick Brouwers, Thomas Abeel, Jack Pronk, Jean Marc Daran (2019), Laboratory Evolution of a Saccharomyces cerevisiae × S. eubayanus Hybrid Under Simulated Lager-Brewing Conditions, In Frontiers in Genetics Volume 10.