Alex N. Salazar, Thomas Abeel (2018), Approximate, simultaneous comparison of microbial genome architectures via syntenic anchoring of quiver representations, In Bioinformatics Volume 34 p.i732-i742.

Thies Gehrmann, Jordi F. Pelkmans, Robin A. Ohm, Aurin M. Vos, Anton S.M. Sonnenberg, Johan J.P. Baars, Han A.B. Wösten, Marcel J.T. Reinders, Thomas Abeel (2018), Nucleus-specific expression in the multinuclear mushroom-forming fungus Agaricus bisporus reveals different nuclear regulatory programs, In Proceedings of the National Academy of Sciences of the United States of America Volume 115 p.4429-4434.

Eveline T. Diepeveen, Thies Gehrmann, Thomas Abeel, Valérie Pourquié, Liedewij Laan (2018), Patterns of conservation and diversification in the fungal polarization network, In Genome Biology and Evolution Volume 10 p.1765-1782.

Abigail L. Manson, Thomas Abeel, James Galagan, Jagadish Chandrabose Sundaramurthi, Siva Kumar Shanmugam, Kannan Palaniyandi, Sujatha Narayanan, Soumya Swaminathan, Ashlee M. Earl (2018), Reply to Lee and Howden.

Christophe Georgescu, Abigail L. Manson McGuire, Alexander D. Griggs, Christopher A. Desjardins, Alejandro Pironti, Ilan Wapinski, Thomas Abeel, Brian J. Haas, Ashlee M. Earl (2018), SynerClust: A highly scalable, synteny-aware orthologue clustering tool, In Microbial Genomics Volume 4 p.1-7.

Arthur Gorter de Vries, Aafke van Aalst, Liset Jansen, L.H. Christensen, Marcel van den Broek, Alex Salazar, Nick Brouwers, Thomas Abeel, Jack Pronk, Jean Marc Daran (2017), Evolution of laboratory-made S. cerevisiae x S. eubayanus hybrid to investigate the domestication of S. pastorianus, 33rd ISSY - conference in Cork.

Abigail L. Manson, Keira A Cohen, Thomas Abeel, Christopher A. Desjardins, Derek T. Armstrong, Clifton E. Barry III, Jeannette Brand, Sinéad B. Chapman, Sang-Nae Cho, Andrei Gabrielian, Alex Salazar, More Authors (2017), Genomic analysis of globally diverse Mycobacterium tuberculosis strains provides insights into the emergence and spread of multidrug resistance, In Nature Genetics Volume 49 p.395-402.

Abigail L. Manson, Thomas Abeel, James E. Galagan, Jagadish Chandrabose Sundaramurthi, Alex Salazar, Thies Gehrmann, Siva Kumar Shanmugam, Kannan Palaniyandi, Sujatha Narayanan, Soumya Swaminathan, Ashlee M. Earl (2017), Mycobacterium tuberculosis Whole Genome Sequences From Southern India Suggest Novel Resistance Mechanisms and the Need for Region-Specific Diagnostics, In Clinical Infectious Diseases Volume 64 p.1494-1501.

Alex N. Salazar, Arthur R. Gorter de Vries, Marcel van den Broek, Melanie Wijsman, Pilar De La Torre Cortes, Anja Brickwedde, Nick Brouwers, Jean Marc G. Daran, Thomas Abeel (2017), Nanopore sequencing enables near-complete de novo assembly of Saccharomyces cerevisiae reference strain CEN.PK113-7D, In FEMS Yeast Research Volume 17 p.1-11.

Arthur Gorter de Vries, Ewout Knibbe, Roderick van Roosmalen, Anissa el Masoudi, Alex Salazar, Marcel van den Broek, Nick Brouwers, Jack Pronk, Thomas Abeel, Jean Marc Daran (2017), Targeted chromosome copy number engineering in aneuploid lager-brewing yeast, BE-basic symposium 2017.