Y Li, D de Ridder, MJL de Groot, MJT Reinders (2008), M-PAS: a comprehensive and flexible metabolic pathway alignment and scoring method, GJM Smit, DHJ Epema, MS Lew (Eds.), In Proceedings of the fourteenth annual conference of the Advanced School for Computing and Imaging p.121-144, ASCI.

Y Li, D de Ridder, MJL de Groot, MJT Reinders (2008), Metabolic pathway alignment (M-PAL) reveals diversity and alternatives in conserved networks, A. Brazma, S. Miyano, T. Akutsu (Eds.), In Proceedings of the 6th Asia-Pacific Bioinformatics Conference p.272-285, Imperial college press.

Y Li, D de Ridder, MJL de Groot, MJT Reinders (2008), Metabolic pathway alignment between species using a comprehensive and flexible similarity measure, In BMC Systems Biology p.1-22.

M Clements, AP de Vries, MJT Reinders (2008), Personalized random walks for social content retrieval, GJM Smit, DHJ Epema, MS Lew (Eds.), In Proceedings of the fourteenth annual conference of the Advanced School for Computing and Imaging p.278-286, ASCI.

MH van Vliet, F Reyal, HM Horlings, Marc J van de Vijver, MJT Reinders, LFA Wessels (2008), Pooling breast cancer datasets has synergetic effect on classification performance and improves signature stability, In BMC Genomics p.1-22.

J Wang, S. Robertson, AP de Vries, MJT Reinders (2008), Probabilistic relevance ranking for collaborative filtering, In Information Retrieval p.477-497.

RJP van Berlo, D de Ridder, MJT Reinders (2008), Revealing cellular objective functions by incorparating gene expression-based contraints in a flux balance analysis framework, GJM Smit, DHJ Epema, MS Lew (Eds.), In Proceedings of the fourteenth annual conference of the Advanced School for Computing and Imaging p.258-264, ASCI.

JF Lichtenauer, EA Hendriks, MJT Reinders (2008), Sign language recognition by combining statistical DTW and independent classification, In IEEE Transactions on Pattern Analysis and Machine Intelligence Volume 30 p.2040-2046.

D Bellomo, P van Nes, MJT Reinders, D de Ridder (2008), Stability cannot be derived from local structure in biochemical networks, SN (Eds.), In Proceedings of the 3rd international conference on bio-inspired models of network, information, and computing systems p.1-8, ICST.

W Meuleman, J.Y.M.N. Engwegen, M-C.W. Gast, LFA Wessels, MJT Reinders (2008), Sub-spectral analysis of mass spectrometry data, GJM Smit, DHJ Epema, MS Lew (Eds.), In Proceedings of the fourteenth annual conference of the Advanced School for Computing and Imaging p.316-322, ASCI.