CN Klijn, H Holstege, J de Ridder, X Liu, MJT Reinders, J Jonkers, LFA Wessels (2008), Identification of cancer genes using a statistical framework for multieperiment analysis of nondiscretized array CGH data, In Nucleic Acids Research Volume 36 p.1-16.

D Bellomo, D de Ridder, S Rossell, PJT Verheijen, MJT Reinders, JJ Heijnen (2008), Identifying the regulatory structure of metabolic networks: a constrained optimization approach, GJM Smit, DHJ Epema, MS Lew (Eds.), In Proceedings of the fourteenth annual conference of the Advanced School for Computing and Imaging p.250-257, ASCI.

Jeroen de Ridder, Marcel Reinders, Lodewyk Wessels (2008), Inference of logic networks from insertion and expression data.

J de Ridder, MJT Reinders, LFA Wessels (2008), Inference of logic networks from isertation and expression data, GJM Smit, DHJ Epema, MS Lew (Eds.), In Proceedings of the fourteenth annual conference of the Advanced School for Computing and Imaging p.362-369, ASCI.

Y Li, D de Ridder, RPW Duin, MJT Reinders (2008), Integration of prior knowledge of measurement noise in kernel density classification, In Pattern Recognition Volume 41 p.320-330.

A.G. Uren, J Kool, K. Matentzoglu, J de Ridder, J Mattison, MJG van Uitert, W. Lagcher, D. Sie, E. Tanger, T. Cox, MJT Reinders, T.J. Hubbart, J. Rogers, J Jonkers, LFA Wessels, D.J. Adams, M. van Lohuizen, A Berns (2008), Large-scale mutagenesis in p19 arf - and p53-deficient mice identifies cancer genes and their collaborative networks, In Cell Volume 133 p.727-741.

Y Li, D de Ridder, MJL de Groot, MJT Reinders (2008), M-PAS: a comprehensive and flexible metabolic pathway alignment and scoring method, GJM Smit, DHJ Epema, MS Lew (Eds.), In Proceedings of the fourteenth annual conference of the Advanced School for Computing and Imaging p.121-144, ASCI.

Y Li, D de Ridder, MJL de Groot, MJT Reinders (2008), Metabolic pathway alignment (M-PAL) reveals diversity and alternatives in conserved networks, A. Brazma, S. Miyano, T. Akutsu (Eds.), In Proceedings of the 6th Asia-Pacific Bioinformatics Conference p.272-285, Imperial college press.

Y Li, D de Ridder, MJL de Groot, MJT Reinders (2008), Metabolic pathway alignment between species using a comprehensive and flexible similarity measure, In BMC Systems Biology p.1-22.

M Clements, AP de Vries, MJT Reinders (2008), Personalized random walks for social content retrieval, GJM Smit, DHJ Epema, MS Lew (Eds.), In Proceedings of the fourteenth annual conference of the Advanced School for Computing and Imaging p.278-286, ASCI.