M Hulsman, MJT Reinders, D de Ridder (2008), Combining kernels to predict protein complexes, GJM Smit, DHJ Epema, MS Lew (Eds.), In Proceedings of the fourteenth annual conference of the Advanced School for Computing and Imaging p.145-152, ASCI.

W Meuleman, J.Y.M.N. Engwegen, M-C.W. Gast, J.H. Beijnen, MJT Reinders, LFA Wessels (2008), Comparison of normalisation methods for surface-enhanced laser desorption and ionisation (SELDI) time-of-flight (TOF) mass spectrometry data, In BMC Bioinformatics p.1-11.

TA Knijnenburg, LFA Wessels, MJT Reinders (2008), Creating gene set activity profiles with time-series expression data, In International Journal of Bioinformatics Research and Applications (online) Volume 4 p.306-322.

M Clements, AP de Vries, MJT Reinders (2008), Detecting synonyms in social tagging systems to improve content retrieval, In Proceedings of the 31st annual international ACM SIGIR conference on research and development in p.739-740, ACM.

CN Klijn, H Holstege, J de Ridder, X Liu, MJT Reinders, J Jonkers, LFA Wessels (2008), Identification of cancer genes using a statistical framework for multieperiment analysis of nondiscretized array CGH data, In Nucleic Acids Research Volume 36 p.1-16.

D Bellomo, D de Ridder, S Rossell, PJT Verheijen, MJT Reinders, JJ Heijnen (2008), Identifying the regulatory structure of metabolic networks: a constrained optimization approach, GJM Smit, DHJ Epema, MS Lew (Eds.), In Proceedings of the fourteenth annual conference of the Advanced School for Computing and Imaging p.250-257, ASCI.

Jeroen de Ridder, Marcel Reinders, Lodewyk Wessels (2008), Inference of logic networks from insertion and expression data.

J de Ridder, MJT Reinders, LFA Wessels (2008), Inference of logic networks from isertation and expression data, GJM Smit, DHJ Epema, MS Lew (Eds.), In Proceedings of the fourteenth annual conference of the Advanced School for Computing and Imaging p.362-369, ASCI.

Y Li, D de Ridder, RPW Duin, MJT Reinders (2008), Integration of prior knowledge of measurement noise in kernel density classification, In Pattern Recognition Volume 41 p.320-330.

A.G. Uren, J Kool, K. Matentzoglu, J de Ridder, J Mattison, MJG van Uitert, W. Lagcher, D. Sie, E. Tanger, T. Cox, MJT Reinders, T.J. Hubbart, J. Rogers, J Jonkers, LFA Wessels, D.J. Adams, M. van Lohuizen, A Berns (2008), Large-scale mutagenesis in p19 arf - and p53-deficient mice identifies cancer genes and their collaborative networks, In Cell Volume 133 p.727-741.