TA Knijnenburg, JM Daran, MA van den Broek, PAS Daran-Lapujade, JH de Winde, JT Pronk, MJT Reinders, LFA Wessels (2009), Combinatorial effects of environmental parameters on transcriptional regulation in Saccharomyces cerevisiae: A quantitative analysis of a compendium of chemostat-based transcriptome data, In BMC Genomics Volume 10 p.1-20.

JJ de Ronde, J Hannemann, H Halfwerk, L Mulder, ME Straver, MJTFD Vrancken Peeters, J Wesseling, M van de Vijver, LFA Wessels, S Rodenhuis (2009), Concordance of clinical and molecular breast cancer subtyping in the context of preoperative chemotherapy response, In Breast Cancer Research and Treatment Volume 119 p.119-126.

Jeroen de Ridder, Jan Bot, Jaap Kool, Anthony Uren, Lodewyk Wessels, Marcel Reinders (2009), Discovering cancer pathways: by inferring combinatorial association logic.

MH van Vliet, LFA Wessels, MJT Reinders (2009), Knowledge driven decomposition of tumor expression profiles, In BMC Bioinformatics Volume 10 p.1-12.

F Reyal, MH van Vliet, NJ Armstrong, HM Horlings, KE de Visser, M. Kok, AE Teschendorff, S Mook, L van 't Veer, C Caldas, RJ Salmon, Marc J van de Vijver, LFA Wessels (2008), A comprehensive analysis of prognostic signatures reveals the high predicitive capacity of the proliferation, Immune response and RNA splicing modules in breast cancer, In Breast Cancer Research (online) Volume 10 p.1-15.

MH van Vliet, LFA Wessels, MJT Reinders (2008), A novel approach to subtype tumors by association with single gene perturbation fingerprints, GJM Smit, DHJ Epema, MS Lew (Eds.), In Proceedings of the fourteenth annual conference of the Advanced School for Computing and Imaging p.376-384, ASCI.

TA Knijnenburg, JM Daran, MA van den Broek, PAS Lapujade, JH de Winde, JT Pronk, LFA Wessels, MJT Reinders (2008), Combinatorial effects of environmental parameters on transcriptional regulation in Saccharomyces cerevisiae: A quantitative analysis of a compendium of chemostat-based transcriptome data, Poster + Abstract at Yeasterday.

TA Knijnenburg, JM Daran, MA van den Broek, PAS Lapujade, JH de Winde, JT Pronk, LFA Wessels, MJT Reinders (2008), Combinatorial effects of environmental parameters on transcriptional regulation in Saccharomyces cerevisiae: A quantitative analysis of a compendium of chemostat-based transcriptome data., Abstract at Fifth Symposium KC for Genomics of Industrial Fermentation.

TA Knijnenburg, LFA Wessels, MJT Reinders (2008), Combinatorial influence of environmental parameters on transcription factor activity, In Bioinformatics Volume 24 p.172-181.

W Meuleman, J.Y.M.N. Engwegen, M-C.W. Gast, J.H. Beijnen, MJT Reinders, LFA Wessels (2008), Comparison of normalisation methods for surface-enhanced laser desorption and ionisation (SELDI) time-of-flight (TOF) mass spectrometry data, In BMC Bioinformatics p.1-11.