Abigail L. Manson, Thomas Abeel, James E. Galagan, Jagadish Chandrabose Sundaramurthi, Alex Salazar, Thies Gehrmann, Siva Kumar Shanmugam, Kannan Palaniyandi, Sujatha Narayanan, Soumya Swaminathan, Ashlee M. Earl (2017), Mycobacterium tuberculosis Whole Genome Sequences From Southern India Suggest Novel Resistance Mechanisms and the Need for Region-Specific Diagnostics, In Clinical Infectious Diseases Volume 64 p.1494-1501.

Alex N. Salazar, Arthur R. Gorter de Vries, Marcel van den Broek, Melanie Wijsman, Pilar De La Torre Cortes, Anja Brickwedde, Nick Brouwers, Jean Marc G. Daran, Thomas Abeel (2017), Nanopore sequencing enables near-complete de novo assembly of Saccharomyces cerevisiae reference strain CEN.PK113-7D, In FEMS Yeast Research Volume 17 p.1-11.

Arthur Gorter de Vries, Ewout Knibbe, Roderick van Roosmalen, Anissa el Masoudi, Alex Salazar, Marcel van den Broek, Nick Brouwers, Jack Pronk, Thomas Abeel, Jean Marc Daran (2017), Targeted chromosome copy number engineering in aneuploid lager-brewing yeast, BE-basic symposium 2017.

Keira A Cohen, A. Manson, T. Abeel, C. Desjardins, B. Birren, A.M. Earl (2017), The Diaspora of Multidrug-Resistant Tuberculosis: Whole-Genome Analysis of Globally Migrant MDR Clades, American Thoracic Society 2017 International Conference p.1-1.

Tobias Marschall, Manja Marz, TEPMF Abeel, Louis Dijkstra, Bas E. Dutilh, Ali Ghaffaari, Paul Kersey, Wigard P. Kloosterman, Jeroen de Ridder, Lodewyk Wessels, More Authors (2016), Computational pan-genomics: Status, promises and challenges, In Briefings in Bioinformatics p.1-18.

Lesibana A. Malinga, TEPMF Abeel, Christopher A. Desjardins, Talent C. Dlamini, Gail Cassell, Sinéad B. Chapman, Bruce W. Birren, Ashlee M. Earl, Martie van der Walt (2016), Draft Genome Sequences of Two Extensively Drug-Resistant Strains of Mycobacterium tuberculosis Belonging to the Euro-American S Lineage, In Genome Announcements Volume 4 p.1-2.

Christopher A. Desjardins, Keira A Cohen, Vanisha Munsamy, Thomas Abeel, Kashmeel Maharaj, Bruce J. Walker, Terrance P. Shea, Deepak V. Almeida, Abigail L. Manson, Alex Salazar, More Authors (2016), Genomic and functional analyses of Mycobacterium tuberculosis strains implicate ald in D-cycloserine resistance, In Nature Genetics Volume 48 p.544-551.

Thies Gehrmann, Jordi F. Pelkmans, Han A.B. Wösten, Robin Ohm, Anton Sonnenberg, Johan J.P. Baars, Marcel Reinders, Thomas Abeel (2016), Karyollele specific expression in Agaricus Bisporus.

KA Cohen, Abigail Manson McGuire, Thomas Abeel, Christopher A. Desjardins, AS Pym, Ashlee M. Earl (2016), Whole Genome Analysis of 5,310 Globally Diverse Mycobacterium Tuberculosis Isolates Reveals Consistent Ordering in the Emergence of Drug Resistance, American Thoracic Society 2016 International Conference p.1-1.

Kathryn Winglee, Abigail Manson McGuire, Mamoudou Maiga, TEPMF Abeel, Terrance Shea, Christopher A. Desjardins, Bassirou Diarra, Bocar Baya, Moumine Sanogo, Souleymane Diallo, Ashley M. Earl, William R. Bishai (2016), Whole Genome Sequencing of Mycobacterium africanum Strains from Mali Provides Insights into the Mechanisms of Geographic Restriction, In PLoS Neglected Tropical Diseases (Online) Volume 10 p.1-28.