Laura Henao, Ramin Shirali Hossein Zade, Silvia Restrepo, Johana Husserl, Thomas Abeel (2023), Genomes of four Streptomyces strains reveal insights into putative new species and pathogenicity of scab-causing organisms, In BMC Genomics Volume 24.

Lore Depuydt, Luca Renders, Thomas Abeel, Jan Fostier (2023), Pan-genome de Bruijn graph using the bidirectional FM-index, In BMC Bioinformatics Volume 24.

Marco Teixeira, Stephanie Pillay, Aysun Urhan, Thomas Abeel (2023), SHIP: identifying antimicrobial resistance gene transfer between plasmids, In Bioinformatics (Oxford, England) Volume 39.

Paul van Lent, Joep Schmitz, Thomas Abeel (2023), Simulated Design-Build-Test-Learn Cycles for Consistent Comparison of Machine Learning Methods in Metabolic Engineering, In ACS Synthetic Biology Volume 12 p.2588-2599.

Chengyao Peng, Ali May, Thomas Abeel (2023), Unveiling microbial biomarkers of ruminant methane emission through machine learning, In Frontiers in Microbiology Volume 14.

Junhan Wen, Thomas Abeel, Mathijs de Weerdt (2023), “How sweet are your strawberries?”: Predicting sugariness using non-destructive and affordable hardware, In Frontiers in Plant Science Volume 14.

D. Calderon Franco, Mark C.M. van Loosdrecht, T.E.P.M.F. Abeel, D.G. Weissbrodt (2022), Catch me if you can: Capturing extracellular DNA transformation in mixed cultures via Hi-C sequencing, 18th International Symposium on Microbial Ecology, Lausanne 2022.

M.S. Veldhuis, Simone Ariëns, Rolf J.F. Ypma, T.E.P.M.F. Abeel, Corina C.G. Benschop (2022), Explainable artificial intelligence in forensics: Realistic explanations for number of contributor predictions of DNA profiles, In Forensic Science International Volume 56.

Ramin Shirali Hossein Zade, Aysun Urhan, Alvaro Assis de Souza, Akash Singh, Thomas Abeel (2022), HAT: haplotype assembly tool using short and error-prone long reads, In Bioinformatics (Oxford, England) Volume 38 p.5352-5359.

Paula Ruibal, Kees L.M.C. Franken, Krista E. van Meijgaarden, Marjolein van Wolfswinkel, Ian Derksen, Ferenc A. Scheeren, Peter A. van Veelen, Thomas Abeel, Simone A. Joosten, More Authors (2022), Identification of HLA-E Binding Mycobacterium tuberculosis-Derived Epitopes through Improved Prediction Models, In Journal of Immunology Volume 209 p.1555-1565.