Christopher A. Desjardins, Keira A Cohen, Vanisha Munsamy, Thomas Abeel, Kashmeel Maharaj, Bruce J. Walker, Terrance P. Shea, Deepak V. Almeida, Abigail L. Manson, Alex Salazar, More Authors (2016), Genomic and functional analyses of Mycobacterium tuberculosis strains implicate ald in D-cycloserine resistance, In Nature Genetics Volume 48 p.544-551.

Thies Gehrmann, Jordi F. Pelkmans, Han A.B. Wösten, Robin Ohm, Anton Sonnenberg, Johan J.P. Baars, Marcel Reinders, Thomas Abeel (2016), Karyollele specific expression in Agaricus Bisporus.

KA Cohen, Abigail Manson McGuire, Thomas Abeel, Christopher A. Desjardins, AS Pym, Ashlee M. Earl (2016), Whole Genome Analysis of 5,310 Globally Diverse Mycobacterium Tuberculosis Isolates Reveals Consistent Ordering in the Emergence of Drug Resistance p.1-1.

Kathryn Winglee, Abigail Manson McGuire, Mamoudou Maiga, TEPMF Abeel, Terrance Shea, Christopher A. Desjardins, Bassirou Diarra, Bocar Baya, Moumine Sanogo, Souleymane Diallo, Ashley M. Earl, William R. Bishai (2016), Whole Genome Sequencing of Mycobacterium africanum Strains from Mali Provides Insights into the Mechanisms of Geographic Restriction, In PLoS Neglected Tropical Diseases (Online) Volume 10 p.1-28.

Arlin Keo, Thomas Abeel (2015), Detecting mixed Mycobacterium tuberculosis infection and differences in drug susceptibility with WGS data.

KA Cohen, TEPMF Abeel, A Manson McGuire, CA Desjardins, V Munsamy, TP Shea, BJ Walker, N Bantubani, DV Almeida, L Alvarado, SB Chapman, NR Mvelase, EY Duffy, MG Fitzgerald, P Govender, S Gujja, S Hamilton, C Howarth, JD Larimer, K Maharaj, MD Pearson, ME Priest, Q Zeng, N Padayatchi, J Grosset, SK Young, J Wortman, KP Mlisana, MR O'Donnel, BW Birren, WR Bishai, AS Pym, AM Earl (2015), Evolution of extensively drug-resistant tuberculosis over four decades: Whole genome sequencing and dating analysis of mycobacterium tuberculosis isolates from KwaZulu-Natal, In PLoS Medicine (Print) Volume 12 p.1-22.

KA Cohen, TEPMF Abeel, A Manson McGuire, CA Desjardins, V Munsamy, AS Pym, AM Earl (2015), Molecular antecedents and timing of XDR emergence revealed by whole genome sequencing of mycobacterium tuberculosis in KwaZulu-Natal, South Africa, In American Journal of Respiratory and Critical Care Medicine.

A Salazar, A Earl, C Desjardins, TEPMF Abeel (2015), Normalizing alternate representations of large sequence variants across multiple bacterial genome, In BMC Bioinformatics Volume 16 p.1-2.

A Akbar Velayati, TEPMF Abeel, T Shea, G Konstantinovich Zhavnerko, B Birren, GH Cassell, AM Earl, S Hoffner, P Farnia (2015), Populations of latent mycobacterium tuberculosis lack a cell wall: Isolation, visualization, and whole-genome characterization, In International Journal of Mycobacteriology (online) Volume 5 p.66-73.

J de Ridder, P Meysman, O Oluwagbemi, TEPMF Abeel (2014), Soft skills: An important asset acquired from organizing regional student group activities, In PLoS Computational Biology Volume 10 p.1-3.