Arlin Keo, Thomas Abeel (2015), Detecting mixed Mycobacterium tuberculosis infection and differences in drug susceptibility with WGS data.

KA Cohen, TEPMF Abeel, A Manson McGuire, CA Desjardins, V Munsamy, TP Shea, BJ Walker, N Bantubani, DV Almeida, L Alvarado, SB Chapman, NR Mvelase, EY Duffy, MG Fitzgerald, P Govender, S Gujja, S Hamilton, C Howarth, JD Larimer, K Maharaj, MD Pearson, ME Priest, Q Zeng, N Padayatchi, J Grosset, SK Young, J Wortman, KP Mlisana, MR O'Donnel, BW Birren, WR Bishai, AS Pym, AM Earl (2015), Evolution of extensively drug-resistant tuberculosis over four decades: Whole genome sequencing and dating analysis of mycobacterium tuberculosis isolates from KwaZulu-Natal, In PLoS Medicine (Print) Volume 12 p.1-22.

KA Cohen, TEPMF Abeel, A Manson McGuire, CA Desjardins, V Munsamy, AS Pym, AM Earl (2015), Molecular antecedents and timing of XDR emergence revealed by whole genome sequencing of mycobacterium tuberculosis in KwaZulu-Natal, South Africa, In American Journal of Respiratory and Critical Care Medicine.

A Salazar, A Earl, C Desjardins, TEPMF Abeel (2015), Normalizing alternate representations of large sequence variants across multiple bacterial genome, In BMC Bioinformatics Volume 16 p.1-2.

A Akbar Velayati, TEPMF Abeel, T Shea, G Konstantinovich Zhavnerko, B Birren, GH Cassell, AM Earl, S Hoffner, P Farnia (2015), Populations of latent mycobacterium tuberculosis lack a cell wall: Isolation, visualization, and whole-genome characterization, In International Journal of Mycobacteriology (online) Volume 5 p.66-73.

J de Ridder, P Meysman, O Oluwagbemi, TEPMF Abeel (2014), Soft skills: An important asset acquired from organizing regional student group activities, In PLoS Computational Biology (Print) Volume 10 p.1-3.

J de Ridder, TEPMF Abeel, M Michaut, VP Satagopam, N Gehlenborg (2013), Don't wear your new shoes (yet): Taking the right steps to become a successful principal investigator, In PLoS ONE Volume 9 p.1-3.

S Landeghem, J Bjorne, TEPMF Abeel, B De Baets, T Salakoski, Y van de Peer (2012), Semantically linking molecular entities in literature through entity relationships, JD Kim, N Nguyen, Y Wang, JI Tsujii, T Takagi, A Yonezawa (Eds.), In Proceedings of the BioNLP shared task 2011 p.1-9, BioMed Central.