Alexey Gritsenko, Frank Koopman, Marcel Reinders, Jean Marc Daran, Dick de Ridder (2013), Data-driven codon optimization in Saccharomyces cerevisiae.

S Babaei, M Hulsman, MJT Reinders, J de Ridder (2013), Detecting recurrent gene mutation in interaction network context using multi-scale graph diffusion, In BMC Bioinformatics Volume 14:29 p.1-12.

RJP van Berlo, W Winterbach, MJL de Groot, A Bender, PJT Verheijen, MJT Reinders, D de Ridder (2013), Efficient calculation of compound similarity based on maximum common subgraphs and its application to prediction of gene transcript levels, In International Journal of Bioinformatics Research and Applications Volume 9 p.407-432.

JF Nijkamp, M Pop, MJT Reinders, D de Ridder (2013), Exploring variation aware contig graphs for (comparative) metagenomics using MARYGOLD, In Bioinformatics Volume 29 p.2826-2834.

E Taskesen, R Hoogeboezem, R Delwel, MJT Reinders (2013), Hypergeometric analysis of tiling-array and sequence data: detection and interpretation of peaks, In Advances and Applications in Bioinformatics and Chemistry Volume 6 p.55-62.

M Hulsman, JJ Bot, AP de Vries, MJT Reinders (2013), Ibidas: querying flexible data structures to explore heterogeneous bioinformatics data, CJO Baker, G Butler, I Jurisca (Eds.), In Proceedings 9th International Conference on Data Integration in Life Sciences p.23-37, Springer.

W Winterbach, PFA Van Mieghem, MJT Reinders, H Wang, D de Ridder (2013), Local topological signatures for network-based prediction of biological function, A Ngom, E Formenti, J-K Hao, X-M Zhao, T van Laarhoven (Eds.), In Pattern Recognition in Bioinformatics - Proceedings 8th IAPR International Conference PRIB 2013 p.23-34, Springer.

AM Barradas, V Monticone, M Hulsman, C Danoux, H Fernandes, Z Tahmaseni Birgani, F Barrère-de Groot, H Yuan, MJT Reinders, P Habibovic, C van Blitterswijk, J de Boer (2013), Molecular mechanisms of biomaterial-driven osteogenic differentiation in human mesenchymal stromal cells, In Integrative Biology: quantitative biosciences from nano to macro Volume 5 p.920-931.

J de Ridder, J Kool, A.G. Uren, JJ Bot, J de Jong, AG Rust, A Berns, M van Lohuizen, DJ Adams, LFA Wessels, MJT Reinders (2013), Mutational genomics for cancer pathway discovery, A Ngom, E Formenti, J-K Hao, X-M Zhao, T van Laarhoven (Eds.), In Pattern Recognition in Bioinformatcs - Proceedings 8th IAPR International Conference PRIB 2013 p.35-46, Springer.

D de Ridder, J de Ridder, MJT Reinders (2013), Pattern recognition in bioinformatics, In Briefings in Bioinformatics Volume 14 p.633-647.