W Winterbach, D de Ridder, H Wang, MJT Reinders, PFA Van Mieghem (2012), Do greedy assortativity optimization algorithms produce good results?, In European Physical Journal B. Condensed Matter and Complex Systems Volume 85 p.1-9.

BA van den Berg, MJT Reinders, M Hulsman, L Wu, HJ Pel, JA Roubos, D de Ridder (2012), Exploring sequence characteristics related to high-level production of secreted proteins in Aspergillus niger, In PLoS ONE Volume 7 p.1-11.

A Gritsenko, JF Nijkamp, MJT Reinders, D de Ridder (2012), GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies, In Bioinformatics Volume 28 p.1429-1437.

MH van Vliet, HM Horlings, Marc J van de Vijver, MJT Reinders, LFA Wessels (2012), Integration of clinical and gene expression data has a synergetic effect on predicting breast cancer outcome, In PLoS ONE Volume 7 p.1-14.

Bastiaan van den Berg, Marcel Reinders, HJ Pel, J.A. Roubos, Dick de Ridder (2012), Proposal for an enzyme redesign method to improve production rates in Aspergillus niger.

IE Nikerel, J Berkhout, F Hu, B Teusink, MJT Reinders, D de Ridder (2012), Understanding regulation of metabolism through feasibility analysis, In PLoS ONE Volume 7 p.1-15.

HV Unadkat, M Hulsman, K Cornelissen, BJ Papenburg, RK Truckenmüller, GF Post, M Uetz, MJT Reinders, D Stamatialis, CA Blitterswijk, J de Boer (2011), An algorithm-based topographical biomaterials library to instruct cell fate, In Proceedings of the National Academy of Sciences of the United States of America Volume 108 p.16565-16570.

HMJ Sontrop, WFJ Verhaegh, MJT Reinders, PD Moerland (2011), An evaluation protocol for subtype-specific breast cancer event prediction, In PLoS ONE Volume 6 p.1-12.

JJ Bot, MJT Reinders (2011), CytoscapeRPC: a plugin to create, modify and query Cytoscape networks from scripting languages, In Bioinformatics Volume 27 p.2451-2452.

Marc Hulsman, HV Unadkat, Kamiel Cornelissen, Jan de Boer, Marcel Reinders (2011), Data mining the TopoChip.