D.L. Keo, Oleh Dzyubachyk, Jeroen Van Der Grond, Jacobus J. van Hilten, M.J.T. Reinders, A.M.E.T.A. Mahfouz (2021), Transcriptomic Signatures Associated With Regional Cortical Thickness Changes in Parkinson’s Disease, In Frontiers in Neuroscience Volume 15.

Alex N. Salazar, Franklin L. Nobrega, Christine Anyansi, Cristian Aparicio-Maldonado, Ana Rita Costa, Anna C. Haagsma, Anwar Hiralal, Ahmed Mahfouz, Rebecca E. McKenzie, Teunke van Rossum, Stan J.J. Brouns, Thomas Abeel (2020), An educational guide for nanopore sequencing in the classroom, In PLoS Computational Biology Volume 16 p.e1007314.

Tamim Abdelaal, Paul de Raadt, Boudewijn P.F. Lelieveldt, Marcel J.T. Reinders, Ahmed Mahfouz (2020), SCHNEL: Scalable clustering of high dimensional single-cell data, In Bioinformatics (Oxford, England) Volume 36 p.i849-i856.

Tamim Abdelaal, Soufiane Mourragui, Ahmed Mahfouz, Marcel J.T. Reinders (2020), SpaGE: Spatial Gene Enhancement using scRNA-seq, In Nucleic Acids Research Volume 48.

Mgp van der Wijst, D. H. de Vries, H. E. Groot, G. Trynka, C. C. Hon, M. C. Nawijn, C. J. Ye, A. Mahfouz, L. Franke, More Authors (2020), The single-cell eQTLGen consortium, In eLife Volume 9.

Arlin Keo, Ahmed Mahfouz, Angela M.T. Ingrassia, Jean Pascal Meneboo, Celine Villenet, Eugénie Mutez, Thomas Comptdaer, Boudewijn P.F. Lelieveldt, Marcel J.T. Reinders, More Authors (2020), Transcriptomic signatures of brain regional vulnerability to Parkinson’s disease, In Communications Biology Volume 3.

Natasja L. de Vries, Ahmed Mahfouz, Frits Koning, Noel F.C.C. de Miranda (2020), Unraveling the Complexity of the Cancer Microenvironment With Multidimensional Genomic and Cytometric Technologies, In Frontiers in Oncology p.1-15.

Tamim Abdelaal, Lieke C.M. Michielsen, Davy Cats, Dylan Hoogduin, Hailiang Mei, Marcel J.T. Reinders, Ahmed Mahfouz (2019), A comparison of automatic cell identification methods for single-cell RNA sequencing data, In Genome biology Volume 20 p.1-19.

Rebecca D. Hodge, Trygve E. Bakken, Jeremy A. Miller, Kimberly A. Smith, Eliza R. Barkan, Lucas T. Graybuck, Jennie L. Close, Thomas Hollt, Ahmed Mahfouz, Boudewijn Lelieveldt, More Authors (2019), Conserved cell types with divergent features in human versus mouse cortex, In Nature Volume 573 p.61-68.

Eva M.G. Viho, Jacobus C. Buurstede, Ahmed Mahfouz, Lisa L. Koorneef, Lisa T.C.M. Van Weert, René Houtman, Hazel J. Hunt, Jan Kroon, Onno C. Meijer (2019), Corticosteroid Action in the Brain: The Potential of Selective Receptor Modulation, In Neuroendocrinology Volume 109 p.266-276.