Chang Li, Julian Thijssen, Thomas Kroes, Mitchell de Boer, Tamim Abdelaal, Thomas Höllt, Boudewijn Lelieveldt (2023), SpaceWalker enables interactive gradient exploration for spatial transcriptomics data, In Cell Reports Methods Volume 3.

L. G.M. Heezen, T. Abdelaal, M. van Putten, A. Aartsma-Rus, A. Mahfouz, P. Spitali (2023), Spatial transcriptomics reveal markers of histopathological changes in Duchenne muscular dystrophy mouse models, In Nature Communications Volume 14.

Hester Koppejan, Guillaume Beyrend, Marjolijn Hameetman, Tamim Abdelaal, René E.M. Toes, Floris A. van Gaalen (2023), Spondyloarthritis mass cytometry immuno-monitoring: a proof of concept study in the tight-control and treat-to target TiCoSpA trial, In Clinical Rheumatology Volume 42 p.2387-2396.

Akash Singh, Kirti Biharie, Marcel J.T. Reinders, Ahmed Mahfouz, Tamim Abdelaal (2023), scTopoGAN: unsupervised manifold alignment of single-cell data, In Bioinformatics Advances Volume 3.

Iris N. Pardieck, Tetje C. van der Sluis, Esmé T.I. van der Gracht, Dominique M.B. Veerkamp, Felix M. Behr, Suzanne van Duikeren, Guillaume Beyrend, Jasper Rip, Tamim Abdelaal, More Authors (2022), A third vaccination with a single T cell epitope confers protection in a murine model of SARS-CoV-2 infection, In Nature Communications Volume 13.

Vincent van Unen, Laura F. Ouboter, Na Li, Mette Schreurs, Tamim Abdelaal, Yvonne Kooy-Winkelaar, Guillaume Beyrend, Thomas Höllt, P. W.Jeroen Maljaars, M. Luisa Mearin, Ahmed Mahfouz, Anne M.C. Witte, Cornelis H.M. Clemens, Sunje Abraham, Johanna C. Escher, Boudewijn P.F. Lelieveldt, M. Fernanda Pascutti, Andrea E. van der Meulen – de Jong, Frits Koning (2022), Identification of a Disease-Associated Network of Intestinal Immune Cells in Treatment-Naive Inflammatory Bowel Disease, In Frontiers in Immunology Volume 13.

Thomas P. Brouwer, Natasja L. de Vries, Tamim Abdelaal, Zheng Li, Dina Ruano, Arantza Fariña, Boudewijn P.F. Lelieveldt, Hans Morreau, Alexander L. Vahrmeijer, More Authors (2022), Local and systemic immune profiles of human pancreatic ductal adenocarcinoma revealed by single-cell mass cytometry, In Journal for ImmunoTherapy of Cancer Volume 10.

M.A.M.E. Eltager, T.R.M. Abdelaal, A.M.E.T.A. Mahfouz, M.J.T. Reinders (2022), scMoC: single-cell multi-omics clustering, In Bioinformatics Advances Volume 2 p.1-8.

Esmé T.I. van der Gracht, Guillaume Beyrend, Tamim Abdelaal, Iris N. Pardieck, Thomas H. Wesselink, Floortje J. van Haften, Suzanne van Duikeren, Frits Koning, Ramon Arens (2021), Memory CD8⁺ T cell heterogeneity is primarily driven by pathogen-specific cues and additionally shaped by the tissue environment, In iScience Volume 24.

Shamundeeswari Anandan, Liv Cecilie V. Thomsen, Stein Erik Gullaksen, Tamim Abdelaal, Katrin Kleinmanns, Jørn Skavland, Geir Bredholt, Bjørn Tore Gjertsen, Emmet McCormack, Line Bjørge (2021), Phenotypic characterization by mass cytometry of the microenvironment in ovarian cancer and impact of tumor dissociation methods, In Cancers Volume 13 p.1-18.