Iris N. Pardieck, Tetje C. van der Sluis, Esmé T.I. van der Gracht, Dominique M.B. Veerkamp, Felix M. Behr, Suzanne van Duikeren, Guillaume Beyrend, Jasper Rip, Tamim Abdelaal, More Authors (2022), A third vaccination with a single T cell epitope confers protection in a murine model of SARS-CoV-2 infection, In Nature Communications Volume 13.

Vincent van Unen, Laura F. Ouboter, Na Li, Mette Schreurs, Tamim Abdelaal, Yvonne Kooy-Winkelaar, Guillaume Beyrend, Thomas Höllt, P. W.Jeroen Maljaars, M. Luisa Mearin, Ahmed Mahfouz, Anne M.C. Witte, Cornelis H.M. Clemens, Sunje Abraham, Johanna C. Escher, Boudewijn P.F. Lelieveldt, M. Fernanda Pascutti, Andrea E. van der Meulen – de Jong, Frits Koning (2022), Identification of a Disease-Associated Network of Intestinal Immune Cells in Treatment-Naive Inflammatory Bowel Disease, In Frontiers in Immunology Volume 13.

Thomas P. Brouwer, Natasja L. de Vries, Tamim Abdelaal, Zheng Li, Dina Ruano, Arantza Fariña, Boudewijn P.F. Lelieveldt, Hans Morreau, Alexander L. Vahrmeijer, More Authors (2022), Local and systemic immune profiles of human pancreatic ductal adenocarcinoma revealed by single-cell mass cytometry, In Journal for ImmunoTherapy of Cancer Volume 10.

M.A.M.E. Eltager, T.R.M. Abdelaal, A.M.E.T.A. Mahfouz, M.J.T. Reinders (2022), scMoC: single-cell multi-omics clustering, In Bioinformatics Advances Volume 2 p.1-8.

Esmé T.I. van der Gracht, Guillaume Beyrend, Tamim Abdelaal, Iris N. Pardieck, Thomas H. Wesselink, Floortje J. van Haften, Suzanne van Duikeren, Frits Koning, Ramon Arens (2021), Memory CD8+ T cell heterogeneity is primarily driven by pathogen-specific cues and additionally shaped by the tissue environment, In iScience Volume 24.

Shamundeeswari Anandan, Liv Cecilie V. Thomsen, Stein Erik Gullaksen, Tamim Abdelaal, Katrin Kleinmanns, Jørn Skavland, Geir Bredholt, Bjørn Tore Gjertsen, Emmet McCormack, Line Bjørge (2021), Phenotypic characterization by mass cytometry of the microenvironment in ovarian cancer and impact of tumor dissociation methods, In Cancers Volume 13 p.1-18.

T.R.M. Abdelaal (2021), Single-cell Analysis from the perspective of how to Interact, Identify and Integrate cells, PhD Thesis Delft University of Technology.

Tamim Abdelaal, Paul de Raadt, Boudewijn P.F. Lelieveldt, Marcel J.T. Reinders, Ahmed Mahfouz (2020), SCHNEL: Scalable clustering of high dimensional single-cell data, In Bioinformatics (Oxford, England) Volume 36 p.i849-i856.

Tamim Abdelaal, Soufiane Mourragui, Ahmed Mahfouz, Marcel J.T. Reinders (2020), SpaGE: Spatial Gene Enhancement using scRNA-seq, In Nucleic Acids Research Volume 48.

Tamim Abdelaal, Lieke C.M. Michielsen, Davy Cats, Dylan Hoogduin, Hailiang Mei, Marcel J.T. Reinders, Ahmed Mahfouz (2019), A comparison of automatic cell identification methods for single-cell RNA sequencing data, In Genome biology Volume 20 p.1-19.