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Wenbo Yu, Ahmed Mahfouz, Marcel J.T. Reinders (2021), CBA: Cluster-Guided Batch Alignment for Single Cell RNA-seq, In Frontiers in Genetics Volume 12 p.1-12.

Eva M.G. Viho, Jacobus C. Buurstede, Jari B. Berkhout, Ahmed Mahfouz, Onno C. Meijer (2021), Cell type specificity of glucocorticoid signaling in the adult mouse hippocampus, In Journal of Neuroendocrinology Volume 34 (2022).

Arlin Keo, Oleh Dzyubachyk, Jeroen van der Grond, Anne Hafkemeijer, Wilma D.J. van de Berg, Jacobus J. van Hilten, Marcel J.T. Reinders, Ahmed Mahfouz (2021), Cingulate networks associated with gray matter loss in Parkinson's disease show high expression of cholinergic genes in the healthy brain, In European journal of neuroscience Volume 53 p.3727-3739.

Niccolo Tesi, Najada Stringa, Georgios Hadjigeorgiou, Marc Hulsman, Natasja M. van Schoor, A. Ruiz, Iris E. Jansen, Henne Holstege, Sven J. van der Lee, More Authors (2021), Common variants in Alzheimer’s disease and risk stratification by polygenic risk scores, In Nature Communications Volume 12.

Trygve E. Bakken, Nikolas L. Jorstad, Qiwen Hu, Wei Tian, Brian E. Kalmbach, Jeroen Eggermont, Brian D. Aevermann, Thomas Höllt, Boudewijn P. Lelieveldt, More Authors (2021), Comparative cellular analysis of motor cortex in human, marmoset and mouse, In Nature Volume 598 p.111-119.

A.N. Salazar (2021), Comparative genomics in the era of long-reads: An application on industrial yeasts, PhD Thesis Delft University of Technology.

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A. Mey, M. Loog (2021), Consistency and Finite Sample Behavior of Binary Class Probability Estimation, In 35th aaai conference on artificial intelligence 33rd conference on innovative applications of artificial intelligence the eleventh symposium on educational advances in artificial intelligence p.8967-8974, Association for the Advancement of Artificial Intelligence (AAAI).

Rickard Karlsson, Laurens Bliek, Sicco Verwer, Mathijs de Weerdt (2021), Continuous Surrogate-Based Optimization Algorithms Are Well-Suited for Expensive Discrete Problems, Mitra Baratchi, Lu Cao, Walter A. Kosters, Jefrey Lijffijt, Jan N. van Rijn, Frank W. Takes (Eds.), In Artificial Intelligence and Machine Learning - 32nd Benelux Conference, BNAIC/Benelearn 2020, Revised Selected Papers p.48-63, Springer.