M.A.M.E. Eltager, T.R.M. Abdelaal, A.M.E.T.A. Mahfouz, M.J.T. Reinders (2022), scMoC: single-cell multi-omics clustering, In Bioinformatics Advances Volume 2 p.1-8.

Wouter M. Kouw, Marco Loog (2021), A Review of Domain Adaptation without Target Labels, In IEEE Transactions on Pattern Analysis and Machine Intelligence p.766-785.

A. Urhan, T.E.P.M.F. Abeel (2021), A comparative study of pan-genome methods for microbial organisms: Acinetobacter baumannii pan-genome reveals structural variation in antimicrobial resistance-carrying plasmids, In Microbial Genomics Volume 7.

Brian Aevermann, Yun Zhang, Mark Novotny, Mohamed Keshk, Trygve Bakken, Jeremy Miller, Rebecca Hodge, Boudewijn Lelieveldt, Ed Lein, Richard H. Scheuermann (2021), A machine learning method for the discovery of minimum marker gene combinations for cell type identification from single-cell RNA sequencing, In Genome Research Volume 31 p.1767-1780.

Anoushka Joglekar, Andreyi Prjibelski, Ahmed Mahfouz, Paul Collier, Susan Lin , Anna Katharina Schlusche, Jordan Marrocco, Stephen R. Williams, Bettina Haase, More Authors (2021), A spatially resolved brain region- and cell type-specific isoform atlas of the postnatal mouse brain, In Nature Communications Volume 12 p.1-16.

Martijn F.L. Derks, Christian Groß, Marcos S. Lopes, Marcel .J.T. Reinders, Mirte Bosse, Arne B. Gjuvsland, Dick de Ridder, Hendrik-Jan Megens, Martien A.M. Groenen (2021), Accelerated discovery of functional genomic variation in pigs, In Genomics Volume 113 p.2229-2239.

Antonella Mensi, Alessio Franzoni, David M.J. Tax, Manuele Bicego (2021), An Alternative Exploitation of Isolation Forests for Outlier Detection, Andrea Torsello, Luca Rossi, Marcello Pelillo, Battista Biggio, Antonio Robles-Kelly (Eds.), In Structural, Syntactic, and Statistical Pattern Recognition - Joint IAPR International Workshops, S+SSPR 2020, Proceedings p.34-44, Springer.

Wenbo Yu, Ahmed Mahfouz, Marcel J.T. Reinders (2021), CBA: Cluster-Guided Batch Alignment for Single Cell RNA-seq, In Frontiers in Genetics Volume 12 p.1-12.

Eva M.G. Viho, Jacobus C. Buurstede, Jari B. Berkhout, Ahmed Mahfouz, Onno C. Meijer (2021), Cell type specificity of glucocorticoid signaling in the adult mouse hippocampus, In Journal of Neuroendocrinology Volume 34 (2022).

Arlin Keo, Oleh Dzyubachyk, Jeroen van der Grond, Anne Hafkemeijer, Wilma D.J. van de Berg, Jacobus J. van Hilten, Marcel J.T. Reinders, Ahmed Mahfouz (2021), Cingulate networks associated with gray matter loss in Parkinson's disease show high expression of cholinergic genes in the healthy brain, In European journal of neuroscience Volume 53 p.3727-3739.