Shanshan Ren, Koen Bertels, Zaid Al-Ars (2016), Exploration of Alternative GPU Implementations of the Pair-HMMs Forward Algorithm, In Proceedings 3rd International Workshop on High Performance Computing on Bioinformatics p.1-8.

Ernst Houtgast, Vlad Sima, Koen Bertels, Zaid Al-Ars (2016), GPU-Accelerated BWA-MEM Genomic Mapping Algorithm Using Adaptive Load Balancing, Frank Hannig, João M. P. Cardoso, Thilo Pionteck, Dietmar Fey, Wolfgang Schröder-Preikschat, Jürgen Teich (Eds.), In Proceedings - 29th International Conference on Architecture of Computing Systems, ARCS 2016 p.130-142, Springer.

Nauman Ahmed, VM Sima, Ernst Houtgast, Koen Bertels, Z Al-Ars (2016), Heterogeneous hardware/software acceleration of the BWA-MEM DNA alignment algorithm, D Marculescu, F Lim (Eds.), In Proceedings of the 2015 IEEE/ACM International Conference on Computer-Aided Design, ICCAD p.240-246, IEEE.

Johan Peltenburg, Shanshan Ren, Zaid Al-Ars (2016), Maximizing Systolic Array Efficiency to Accelerate the PairHMM Forward Algorithm, Tianhai Tian, Qinghua Jiang, Yunlong Liu, Kevin Burrage, Jiangning Song, Yadong Wang, Xiaohua Hu, Shinichi Morishita, Qian Zhu, Guohua Wang (Eds.), In Proceedings - 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) p.758-762, IEEE.

Ernst Joachim Houtgast, Vlad-Mihai Sima, Giacomo Marchiori, Koen Bertels, Zaid Al-Ars (2016), Power-Efficiency Analysis of Accelerated BWA-MEM Implementations on Heterogeneous Computing Platforms, Peter Athanas, René Cumplido, Claudia Feregrino, Ron Sass (Eds.), In 2016 International Conference on ReConFigurable Computing and FPGAs (ReConFig) p.1-8, IEEE.

Ernst Houtgast, Vlad Sima, Giacomo Marchiori, Koen Bertels, Zaid Al-Ars (2016), Power-Efficient Accelerated Genomic Short Read Mapping on Heterogeneous Computing Platforms, 24th IEEE International Symposium on Field-Programmable Custom Computing Machines, FCCM 2016 p.1-1.

Valery Kritchallo, Erik Vermij, Koen Bertels, Zaid Al-Ars (2016), The Fidelity Slider: A User-Defined Method to Trade off Accuracy for Performance in Canny Edge Detector, In 11th HiPEAC conference p.1-6.

HAD Nguyen, Z Al-Ars, G Smaragdos, C Strydis (2015), Accelerating complex brain-model simulations on GPU platforms, W Nebel (Eds.), In Proceedings of the 2015 Design, Automation and Test in Europe Conference and Exhibition p.974-979, IEEE.

Ernst Houtgast, VM Sima, K Bertels, Z Al-Ars (2015), An FPGA-based systolic array to accelerate the BWA-MEM genomic mapping algorithm, D Soudris, L Carro (Eds.), In Proceedings of the International Conference on Embedded Computer Systems: Architectures, Modeling, and Simulation, SAMOS XV p.221-227, IEEE.

WJ Veneman, J de Sonneville, KJ van der Kolk, A Ordas, Z Al-Ars, AH Meijer, HP Spaink (2015), Analysis of RNAseq datasets from a comparative infectious disease zebrafish model using GeneTiles bioinformatics, In Immunogenetics Volume 67 p.135-147.