Johan Peltenburg, Shanshan Ren, Zaid Al-Ars (2016), Maximizing Systolic Array Efficiency to Accelerate the PairHMM Forward Algorithm, Tianhai Tian, Qinghua Jiang, Yunlong Liu, Kevin Burrage, Jiangning Song, Yadong Wang, Xiaohua Hu, Shinichi Morishita, Qian Zhu, Guohua Wang (Eds.), In Proceedings - 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) p.758-762, IEEE.

Ernst Joachim Houtgast, Vlad-Mihai Sima, Giacomo Marchiori, Koen Bertels, Zaid Al-Ars (2016), Power-Efficiency Analysis of Accelerated BWA-MEM Implementations on Heterogeneous Computing Platforms, Peter Athanas, René Cumplido, Claudia Feregrino, Ron Sass (Eds.), In 2016 International Conference on ReConFigurable Computing and FPGAs (ReConFig) p.1-8, IEEE.

Ernst Houtgast, Vlad Sima, Giacomo Marchiori, Koen Bertels, Zaid Al-Ars (2016), Power-Efficient Accelerated Genomic Short Read Mapping on Heterogeneous Computing Platforms, 24th IEEE International Symposium on Field-Programmable Custom Computing Machines, FCCM 2016 p.1-1.

Valery Kritchallo, Erik Vermij, Koen Bertels, Zaid Al-Ars (2016), The Fidelity Slider: A User-Defined Method to Trade off Accuracy for Performance in Canny Edge Detector, In 11th HiPEAC conference p.1-6.

HAD Nguyen, Z Al-Ars, G Smaragdos, C Strydis (2015), Accelerating complex brain-model simulations on GPU platforms, W Nebel (Eds.), In Proceedings of the 2015 Design, Automation and Test in Europe Conference and Exhibition p.974-979, IEEE Society.

Ernst Houtgast, VM Sima, K Bertels, Z Al-Ars (2015), An FPGA-based systolic array to accelerate the BWA-MEM genomic mapping algorithm, D Soudris, L Carro (Eds.), In Proceedings of the International Conference on Embedded Computer Systems: Architectures, Modeling, and Simulation, SAMOS XV p.221-227, IEEE Society.

WJ Veneman, J de Sonneville, KJ van der Kolk, A Ordas, Z Al-Ars, AH Meijer, HP Spaink (2015), Analysis of RNAseq datasets from a comparative infectious disease zebrafish model using GeneTiles bioinformatics, In Immunogenetics Volume 67 p.135-147.

H Mushtaq, Z Al-Ars, K Bertels (2015), Calculation of worst-case execution time for multicore processors using deterministic execution, R Reis, R Nunes de Lima (Eds.), In Proceedings of the 2015 25th International Workshop on Power and Timing Modeling, Optimization and Simulation, PATMOS p.33-39, IEEE Society.

H Mushtaq, Z Al-Ars (2015), Cluster-based Apache Spark implementation of the GATK DNA analysis pipeline, J Huan, S Miyano, A Shehu (Eds.), In Proceedings of the International Conference on Bioinformatics and Biomedicine p.1471-1477, IEEE Society.

Shanshan Ren, Vlad-Mihai Sima, Zaid Al-Ars (2015), FPGA acceleration of the pair-HMMs forward algorithm for DNA sequence analysis, Jun (Luke) Huan, Satoru Miyano, Amarda Shehu (Eds.), In Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine p.1465-1470, IEEE.