Amin Allahyar, Joske Ubels, Jeroen de Ridder (2019), A data-driven interactome of synergistic genes improves network-based cancer outcome prediction, In PLoS Computational Biology Volume 15 p.1-21.

Amin Allahyar, Carlo Vermeulen, Britta A.M. Bouwman, Peter H.L. Krijger, Marjon J.A.M. Verstegen, Geert Geeven, Mark Pieterse, Roy Straver, Kees Jalink, More Authors (2018), Enhancer hubs and loop collisions identified from single-allele topologies, In Nature Genetics Volume 50 p.1151-1160.

Amin Allahyar (2018), Molecular interactomes: Network-guided cancer prognosis prediction & multi-way chromatin interaction analysis, PhD Thesis Delft University of Technology.

Kathryn L. Gilroy, Anne Terry, Asif Naseer, Jeroen de Ridder, Amin Allahyar, Weiwei Wang, Eric Carpenter, Andrew Mason, Gane K.S. Wong, Ewan R. Cameron, Anna Kilbey, James C. Neil (2016), Gamma-Retrovirus integration marks cell type-specific cancer genes: A novel profiling tool in cancer genomics, In PLoS ONE Volume 11 p.1-20.

A Allahyar, J de Ridder (2015), FERAL: Network-based classifier with application to breast cancer outcome prediction, In Bioinformatics Volume 31 p.i311-i319.