Stavros Makrodimitris, Marcel Reinders, Roeland van Ham (2020), A thorough analysis of the contribution of experimental, derived and sequence-based predicted protein-protein interactions for functional annotation of proteins, In PLoS ONE Volume 15 p.1-18.

Stavros Makrodimitris, Roeland C.H.J. Van Ham, Marcel J.T. Reinders (2020), Automatic gene function prediction in the 2020’s, In Genes p.1-18.

Stavros Makrodimitris, Marcel J.T. Reinders, Roeland C.H.J. van Ham (2020), Metric learning on expression data for gene function prediction, In Bioinformatics (Oxford, England) Volume 36 p.1182-1190.

Amelia Villegas-Morcillo, Stavros Makrodimitris, Roeland C H J van Ham, Angel M Gomez, Victoria Sanchez, Marcel J T Reinders (2020), Unsupervised protein embeddings outperform hand-crafted sequence and structure features at predicting molecular function, In Bioinformatics Volume 37 p.162-170.

Stavros Makrodimitris, Roeland van Ham, Marcel Reinders (2019), Improving protein function prediction using protein sequence and GO-term similarities, In Bioinformatics Volume 35 p.1116-1124.