Lieke Michielsen, Marcel J.T. Reinders, Ahmed Mahfouz (2021), Hierarchical progressive learning of cell identities in single-cell data, In Nature Communications Volume 12.

Tamim Abdelaal, Lieke C.M. Michielsen, Davy Cats, Dylan Hoogduin, Hailiang Mei, Marcel J.T. Reinders, Ahmed Mahfouz (2019), A comparison of automatic cell identification methods for single-cell RNA sequencing data, In Genome biology Volume 20 p.1-19.

Sjoerd M.H. Huisman, Baldur Van Lew, Ahmed Mahfouz, Nicola Pezzotti, Thomas Höllt, Lieke Michielsen, Anna Vilanova, Marcel J.T. Reinders, Boudewijn P.F. Lelieveldt (2017), BrainScope: Interactive visual exploration of the spatial and temporal human brain transcriptome, In Nucleic Acids Research Volume 45.