Alexander Vieth, Thomas Kroes, Julian Thijssen, Baldur van Lew, Jeroen Eggermont, Soumyadeep Basu, Elmar Eisemann, Anna Vilanova, Thomas Höllt, Boudewijn Lelieveldt (2024), ManiVault: A Flexible and Extensible Visual Analytics Framework for High-Dimensional Data, In IEEE Transactions on Visualization and Computer Graphics Volume 30 p.175-185.

Tamim Abdelaal, Laurens M. Grossouw, R. Jeroen Pasterkamp, Boudewijn P.F. Lelieveldt, Marcel J.T. Reinders, Ahmed Mahfouz (2024), SIRV: Spatial inference of RNA velocity at the single-cell resolution, In NAR Genomics and Bioinformatics Volume 6.

Michael Hawrylycz, Maryann E. Martone, Giorgio A. Ascoli, Jan G. Bjaalie, Hong Wei Dong, Satrajit S. Ghosh, Jesse Gillis, David R. Haynor, Boudewijn Lelieveldt, More Authors (2023), A guide to the BRAIN Initiative Cell Census Network data ecosystem, In PLoS biology Volume 21.

Nikolas L. Jorstad, Janet H.T. Song, David Exposito-Alonso, Hamsini Suresh, Nathan Castro-Pacheco, Soumyadeep Basu, Thomas Kroes, Thomas Höllt, Boudewijn P. Lelieveldt, More Authors (2023), Comparative transcriptomics reveals human-specific cortical features, In Science (New York, N.Y.) Volume 382.

Soumyadeep Basu, Jeroen Eggermont, Thomas Kroes, Nikolas Jorstad, Trygve Bakken, Ed Lein, Boudewijn Lelieveldt, Thomas Höllt (2023), Cytosplore Simian Viewer: Visual Exploration for Multi-Species Single-Cell RNA Sequencing Data, Christian Hansen, James Procter, Renata G. Raidou, Daniel Jönsson, Thomas Höllt (Eds.), In Eurographics Workshop on Visual Computing for Biology and Medicine p.111-120, The Eurographics Association.

Alexander Vieth, Boudewijn Lelieveldt, Elmar Eisemann, Anna Vilanova, Thomas Höllt (2023), Interactions for Seamlessly Coupled Exploration of High-Dimensional Images and Hierarchical Embeddings, Michael Guthe, Thorsten Grosch (Eds.), In Vision, Modeling, and Visualization p.63-70, The Eurographics Association.

Yun Zhang, Jeremy A. Miller, Jeongbin Park, Boudewijn P. Lelieveldt, Tamim Abdelaal, Oleh Dzyubachyk, Ed S. Lein, Richard H. Scheuermann, More Authors (2023), Reference-based cell type matching of in situ image-based spatial transcriptomics data on primary visual cortex of mouse brain, In Scientific Reports Volume 13.

Chang Li, Julian Thijssen, Thomas Kroes, Mitchell de Boer, Tamim Abdelaal, Thomas Höllt, Boudewijn Lelieveldt (2023), SpaceWalker enables interactive gradient exploration for spatial transcriptomics data, In Cell Reports Methods Volume 3.

Olaf M. Neve, Yunjie Chen, Qian Tao, Stephan R. Romeijn, Nick P. de Boer, Willem Grootjans, Boudewijn P.F. Lelieveldt, Jeroen C. Jansen, Marius Staring, More Authors (2022), Fully Automated 3D Vestibular Schwannoma Segmentation with and without Gadolinium-based Contrast Material: A Multicenter, Multivendor Study, In Radiology: Artificial Intelligence Volume 4.

Vincent van Unen, Laura F. Ouboter, Na Li, Mette Schreurs, Tamim Abdelaal, Yvonne Kooy-Winkelaar, Guillaume Beyrend, Thomas Höllt, P. W.Jeroen Maljaars, M. Luisa Mearin, Ahmed Mahfouz, Anne M.C. Witte, Cornelis H.M. Clemens, Sunje Abraham, Johanna C. Escher, Boudewijn P.F. Lelieveldt, M. Fernanda Pascutti, Andrea E. van der Meulen – de Jong, Frits Koning (2022), Identification of a Disease-Associated Network of Intestinal Immune Cells in Treatment-Naive Inflammatory Bowel Disease, In Frontiers in Immunology Volume 13.