Laura F. Ouboter, Ciska Lindelauf, Qinyue Jiang, Mette Schreurs, Tamim R. Abdelaal, Sietse J. Luk, Marieke C. Barnhoorn, Willem E. Hueting, Andrea E. van der Meulen-de Jong, More Authors (2024), Activated HLA-DR+CD38+ Effector Th1/17 Cells Distinguish Crohn’s Disease-associated Perianal Fistulas from Cryptoglandular Fistulas, In INFLAMMATORY BOWEL DISEASES Volume 30 p.2146-2161.

Stavros Makrodimitris, Bram Pronk, Tamim Abdelaal, Marcel Reinders (2024), An in-depth comparison of linear and non-linear joint embedding methods for bulk and single-cell multi-omics, In Briefings in Bioinformatics.

Li Jia, Na Li, Tamim R.M. Abdelaal, Ciska Lindelauf, Qinyue Jiang, Yanling Xiao, M. Fernanda Pascutti, Pieter S. Hiemstra, Jan Stolk, More Authors (2024), High-Dimensional Mass Cytometry Reveals Emphysema-associated Changes in the Pulmonary Immune System, In American journal of respiratory and critical care medicine Volume 210 p.1002-1016.

Joana B. Nunes, Marieke E. Ijsselsteijn, Tamim Abdelaal, Rick Ursem, Manon van der Ploeg, Martin Giera, Bart Everts, Ahmed Mahfouz, Bram Heijs, Noel F.C.C. de Miranda (2024), Integration of mass cytometry and mass spectrometry imaging for spatially resolved single-cell metabolic profiling, In Nature Methods Volume 21 p.1796-1800.

Tamim Abdelaal, Laurens M. Grossouw, R. Jeroen Pasterkamp, Boudewijn P.F. Lelieveldt, Marcel J.T. Reinders, Ahmed Mahfouz (2024), SIRV: Spatial inference of RNA velocity at the single-cell resolution, In NAR Genomics and Bioinformatics Volume 6.

Mostafa Eltager, Tamim Abdelaal, Mohammed Charrout, A.M.E.T.A. Mahfouz, M.J.T. Reinders, Stavros Makrodimitris (2023), Benchmarking variational AutoEncoders on cancer transcriptomics data, In PLoS ONE Volume 18 .

Liv Cecilie Vestrheim Thomsen, Katrin Kleinmanns, Shamundeeswari Anandan, Stein Erik Gullaksen, Tamim Abdelaal, Grete Alrek Iversen, Lars Andreas Akslen, Emmet McCormack, Line Bjørge (2023), Combining Mass Cytometry Data by CyTOFmerge Reveals Additional Cell Phenotypes in the Heterogeneous Ovarian Cancer Tumor Microenvironment: A Pilot Study, In Cancers Volume 15.

Na Li, Junhui Zhu, Peiru Chen, Chuntong Bao, Jun Wang, Tamim Abdelaal, Dexi Chen, Sibo Zhu, Wenjing Wang, More Authors (2023), High-dimensional analysis reveals an immune atlas and novel neutrophil clusters in the lungs of model animals with Actinobacillus pleuropneumoniae-induced pneumonia, In Veterinary research Volume 54 p.76.

Tetje C. van der Sluis, Guillaume Beyrend, Esmé T.I. van der Gracht, Tamim Abdelaal, Simon P. Jochems, Robert A. Belderbos, Thomas H. Wesselink, Suzanne van Duikeren, Ramon Arens, More Authors (2023), OX40 agonism enhances PD-L1 checkpoint blockade by shifting the cytotoxic T cell differentiation spectrum, In Cell Reports Medicine Volume 4.

Yun Zhang, Jeremy A. Miller, Jeongbin Park, Boudewijn P. Lelieveldt, Tamim Abdelaal, Oleh Dzyubachyk, Ed S. Lein, Richard H. Scheuermann, More Authors (2023), Reference-based cell type matching of in situ image-based spatial transcriptomics data on primary visual cortex of mouse brain, In Scientific Reports Volume 13.