Stavros Makrodimitris, Bram Pronk, Tamim Abdelaal, Marcel Reinders (2024), An in-depth comparison of linear and non-linear joint embedding methods for bulk and single-cell multi-omics, In Briefings in Bioinformatics.

Duco H.K. Gaillard, Pien Lof, Erik A. Sistermans, Tom Mokveld, Hugo Mark Horlings, Constantijne H. Mom, Marcel J.T. Reinders, Frédéric Amant, Daan Van Den Broek, Lodewyk F.A. Wessels (2024), Evaluating the effectiveness of pre-operative diagnosis of ovarian cancer using minimally invasive liquid biopsies by combining serum human epididymis protein 4 and cell-free DNA in patients with an ovarian mass, In International Journal of Gynecological Cancer.

Jeppe F. Severens, E. Onur Karakaslar, Bert A. van der Reijden, Elena Sánchez-López, Redmar R. van den Berg, Constantijn J.M. Halkes, Peter van Balen, Marcel J.T. Reinders, Erik B. van den Akker, More Authors (2024), Mapping AML heterogeneity - multi-cohort transcriptomic analysis identifies novel clusters and divergent ex-vivo drug responses, In Leukemia Volume 38 p.751-761.

Ramin Ghorbani, Marcel J.T. Reinders, David M.J. Tax (2024), Personalized anomaly detection in PPG data using representation learning and biometric identification, In Biomedical Signal Processing and Control Volume 94.

Lieke Michielsen, Marcel J. T. Reinders, Ahmed Mahfouz (2024), Predicting cell population-specific gene expression from genomic sequence, In Frontiers in Bioinformatics Volume 4.

T.O. Mokveld, Z. Al-Ars, Erik A. Sistermans, M.J.T. Reinders (2023), A comprehensive performance analysis of sequence-based within-sample testing NIPT methods, In PLoS ONE Volume 18.

Michiel Bongaerts, Purva Kulkarni, Alan Zammit, Ramon Bonte, Leo A. J. Kluijtmans, Henk J. Blom, Udo F. H. Engelke, D.M.J. Tax, George J.G. Ruijter, M.J.T. Reinders (2023), Benchmarking Outlier Detection Methods for Detecting IEM Patients in Untargeted Metabolomics Data, In Metabolites Volume 13.

Mostafa Eltager, Tamim Abdelaal, Mohammed Charrout, A.M.E.T.A. Mahfouz, M.J.T. Reinders, Stavros Makrodimitris (2023), Benchmarking variational AutoEncoders on cancer transcriptomics data, In PLoS ONE Volume 18 .

Niccolo' Tesi, Sven van der Lee, Marc Hulsman, Henne Holstege, Marcel Reinders (2023), Bioinformatics Strategies for the Analysis and Integration of Large-Scale Multiomics Data, The journals of gerontology. Series A, Biological sciences and medical sciences Volume 78 p.659-662.

J. M. Smit, J. H. Krijthe, W. M.R. Kant, J. A. Labrecque, M. Komorowski, D. A.M.P.J. Gommers, J. van Bommel, M. J.T. Reinders, M. E. van Genderen (2023), Causal inference using observational intensive care unit data: a scoping review and recommendations for future practice, In npj Digital Medicine.