S Babaei, M Hulsman, MJT Reinders, J de Ridder (2013), Detecting recurrent gene mutation in interaction network context using multi-scale graph diffusion, In BMC Bioinformatics Volume 14:29 p.1-12.

JM Lewis, VR de Sa, LJP van der Maaten (2013), Divvy: fast and intuitive exploratory data analysis, In Journal of Machine Learning Research Volume 14 p.3159-3163.

J de Ridder, TEPMF Abeel, M Michaut, VP Satagopam, N Gehlenborg (2013), Don't wear your new shoes (yet): Taking the right steps to become a successful principal investigator, In PLoS ONE Volume 9 p.1-3.

M Heblij, MJH Almering, AF de Hulster, MAH Luttik, D de Ridder, JT Pronk, PAS Daran-Lapujade (2013), Dynamic behavior of Saccharomyces cerevisiae during diurnal temperature cycles, 5th Conference on Physiology of Yeast and Filamentous Fungi.

RJP van Berlo, W Winterbach, MJL de Groot, A Bender, PJT Verheijen, MJT Reinders, D de Ridder (2013), Efficient calculation of compound similarity based on maximum common subgraphs and its application to prediction of gene transcript levels, In International Journal of Bioinformatics Research and Applications Volume 9 p.407-432.

JF Nijkamp, M Pop, MJT Reinders, D de Ridder (2013), Exploring variation aware contig graphs for (comparative) metagenomics using MARYGOLD, In Bioinformatics Volume 29 p.2826-2834.

VC Dinh, RPW Duin, I Piqueras-Salazar, M Loog (2013), FiDOS: A generalized Fisher based feature extraction method for domain shift, In Pattern Recognition Volume 46 p.2510-2518.

J Deelen, H.-W. Uh, R Monajemi, D van Heemst, PE Thijssen, S Böhringer, EB van den Akker, AJM de Craen, F Rivadeneira, AG Uitterlinden, RGJ Westendorp, JJ Goeman, PE Slagboom, JJ Houwing-Duistermaat, M Beekman (2013), Gene set analysis of GWAS data for human longevity highlights the relevance of the insulin/IGF-1 signaling and telomere maintenance pathways, In Age Volume 35 p.235-249.

B Oud, VG Guadalupe Medina, K Nijkamp, Dick de Ridder, JT Pronk, AJA van Maris, JM Daran (2013), Genome duplication and mutations in ACE2 cause multicellar, fast-sedimenting phenotypes in evolved Saccharomyces cerevisiae, A.L. Demain (Eds.), In Proceedings of The National Academy of Sciences of the United States of America p.E4223-E4231.

M Beekman, H Blanché, M Perola, A Hervonen, V Bezrukov, E Sikora, F Flachsbart, L Christiansen, AJM de Craen, TBL Kirkwood, I Maeve Rea, M Poulain, JM Robine, S Valensin, MA Stazi, G Passarino, L Deiana, ES Gonos, L Paternoster, TIA Sørensen, Q Tan, Q Helmer, EB van den Akker, J Deelen, F Martella, HJ Cordell, KL Ayers, JW Vaupel, O Tornwall, TE Johnson, S Schreiber, M Lathrop, A Skytthe, RJG Westendorp, K Christensen, J Gampe, A Nebel, JJ Houwing-Duistermaat, PE Slagboom, C Franceschi (2013), Genome-wide linkage analysis for human longevity: Genetics of Healthy Aging Study, In Aging Cell Volume 12 p.184-193.