Laurens Bliek, Arthur Guijt, Rickard Karlsson, Sicco Verwer, Mathijs de Weerdt (2023), Benchmarking surrogate-based optimisation algorithms on expensive black-box functions, In Applied Soft Computing Volume 147.

Mostafa Eltager, Tamim Abdelaal, Mohammed Charrout, A.M.E.T.A. Mahfouz, M.J.T. Reinders, Stavros Makrodimitris (2023), Benchmarking variational AutoEncoders on cancer transcriptomics data, In PLoS ONE Volume 18 .

Niccolo' Tesi, Sven van der Lee, Marc Hulsman, Henne Holstege, Marcel Reinders (2023), Bioinformatics Strategies for the Analysis and Integration of Large-Scale Multiomics Data, The journals of gerontology. Series A, Biological sciences and medical sciences Volume 78 p.659-662.

D. Calderon Franco, Mark C.M. van Loosdrecht, T.E.P.M.F. Abeel, D.G. Weissbrodt (2023), Catch me if you can: capturing microbial community transformation by extracellular DNA using Hi-C sequencing, In Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology Volume 116 p.667-685.

J. M. Smit, J. H. Krijthe, W. M.R. Kant, J. A. Labrecque, M. Komorowski, D. A.M.P.J. Gommers, J. van Bommel, M. J.T. Reinders, M. E. van Genderen (2023), Causal inference using observational intensive care unit data: a scoping review and recommendations for future practice, In npj Digital Medicine.

Pia Keukeleire, Stavros Makrodimitris, Marcel Reinders (2023), Cell type deconvolution of methylated cell-free DNA at the resolution of individual reads, In NAR Genomics and Bioinformatics Volume 5.

Kirti Biharie, Lieke Michielsen, Marcel J.T. Reinders, Ahmed Mahfouz (2023), Cell type matching across species using protein embeddings and transfer learning, In Bioinformatics (Oxford, England) Volume 39 p.i404-i412.

Joris van de Haar, Xuhui Ma, Salo N. Ooft, Pim W. van der Helm, Louisa R. Hoes, Sara Mainardi, David J. Pinato, Kristi Sun, Lodewyk F. A. Wessels, More Authors (2023), Codon-specific KRAS mutations predict survival benefit of trifluridine/tipiracil in metastatic colorectal cancer, In Nature Medicine.

Bernd Dudzik, Hayley Hung, Mark A. Neerincx, Joost Broekens (2023), Collecting Mementos: A Multimodal Dataset for Context-Sensitive Modeling of Affect and Memory Processing in Responses to Videos, In IEEE Transactions on Affective Computing Volume 14 p.1249-1266.

A. Lengyel, O. Strafforello, R. Bruintjes, A.S. Gielisse, J.C. van Gemert (2023), Color Equivariant Convolutional Networks, In 37th Conference on Neural Information Processing Systems.