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JF Nijkamp, MA van den Broek, JMA Geertman, MJT Reinders, JM Daran, D de Ridder (2012), De novo detection of copy number variation by co-assembly, In Bioinformatics Volume 28 p.3195-3202.

JF Nijkamp, M van den Broek, M Datema, S de Kok, L Bosman, MAH Luttik, PAS Daran-Lapujade, W Vongsangnak, J Nielsen, WHN Heijne, P Klaassen, CJ Paddon, D Platt, P Kotter, RC van Ham, MJT Reinders, JT Pronk, D de Ridder, JM Daran (2012), De novo sequencing, assembly and analysis of the genome of the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D, a model for modern industrial biotechnology, In Microbial Cell Factories Volume 11 p.1-16.

Sepideh Babaei, Marc Hulsman, Marcel Reinders, Jeroen de Ridder (2012), Detecting recurrent gene mutation in interaction network context using multi-scale graph diffusion.

W Winterbach, D de Ridder, H Wang, MJT Reinders, PFA Van Mieghem (2012), Do greedy assortativity optimization algorithms produce good results?, In European Physical Journal B. Condensed Matter and Complex Systems Volume 85 p.1-9.

VV Cheplygina, DMJ Tax, M Loog (2012), Does one rotten apple spoil the whole barrel?, SN (Eds.), In Proceedings of 21st International Conference on Pattern Recognition (ICPR 2012) p.1156-1159, IJSCI.

BA van den Berg, MJT Reinders, M Hulsman, L Wu, HJ Pel, JA Roubos, D de Ridder (2012), Exploring sequence characteristics related to high-level production of secreted proteins in Aspergillus niger, In PLoS ONE Volume 7 p.1-11.

M van de Giessen, AMA van der Laan, EA Hendriks, M Vidoretta, JHC Reiber, CR Jost, HJ Tanke, BPF Lelieveldt (2012), Fully automated attenuation measurement and motion correction in FLIP image sequences, In IEEE Transactions on Medical Imaging Volume 31 p.461-473.

A Gritsenko, JF Nijkamp, MJT Reinders, D de Ridder (2012), GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies, In Bioinformatics Volume 28 p.1429-1437.

JH Krijthe, M Nap, M Loog (2012), Improving cross-validation based classifier selection using meta-learning, SN (Eds.), In Proceedings of 21st International Conference on Pattern Recognition (ICPR 2012) p.2873-2867, Springer.