Julia A. Schwartzman, Francois Lebreton, Rauf Salamzade, Terrance Shea, Melissa J. Martin, Katharina Schaufler, Aysun Urhan, Thomas Abeel, Ilana L.B.C. Camargo, More Authors (2024), Global diversity of enterococci and description of 18 previously unknown species, In Proceedings of the National Academy of Sciences of the United States of America Volume 121.

Aysun Urhan, Bianca-Maria Cosma, Ashlee M. Earl, Abigail L. Manson, Thomas Abeel (2024), SAFPred: Synteny-aware gene function prediction for bacteria using protein embeddings, In Bioinformatics Volume 40.

A. Urhan (2024), The Microbial World Magnified Through the Bright Lens of Comparative Genomics, PhD Thesis Delft University of Technology.

Marco Teixeira, Stephanie Pillay, Aysun Urhan, Thomas Abeel (2023), SHIP: identifying antimicrobial resistance gene transfer between plasmids, In Bioinformatics (Oxford, England) Volume 39.

Ramin Shirali Hossein Zade, Aysun Urhan, Alvaro Assis de Souza, Akash Singh, Thomas Abeel (2022), HAT: haplotype assembly tool using short and error-prone long reads, In Bioinformatics (Oxford, England) Volume 38 p.5352-5359.

S. Pillay, D. Calderon Franco, A. Urhan, T.E.P.M.F. Abeel (2022), Metagenomic-based surveillance systems for antibiotic resistance in non-clinical settings, In Frontiers in Microbiology Volume 13.

A. Urhan, T.E.P.M.F. Abeel (2021), A comparative study of pan-genome methods for microbial organisms: Acinetobacter baumannii pan-genome reveals structural variation in antimicrobial resistance-carrying plasmids, In Microbial Genomics Volume 7.

Aysun Urhan, Thomas Abeel (2021), Emergence of novel SARS-CoV-2 variants in the Netherlands, In Scientific Reports Volume 11.

Aysun Urhan, Burak Alakent (2020), Integrating adaptive moving window and just-in-time learning paradigms for soft-sensor design, In Neurocomputing Volume 392 p.23-37.

A. Urhan, Burak Alakent (2019), An Exploratory Analysis of Biased Learners in Soft-Sensing Frames.